| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1663 |
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| Symbol | |
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| ID | 5455749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1796556 |
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| End bp | 1797284 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877237 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001412939 |
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| Protein GI | 154252115 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.73156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCAA CGGCAATCGT GGCGGGGGTT GGCCCGCACA AGGGGCTTGG CGCGGTGCTC
TCTCACAGGG CGGCGGGCGA GGGGCTTCAC GTTTTTGTGG CGGGCCGCAC GCTTGAAAAG
CTGGAAGCGG TCGCCGAGGC GATACGGGCG GAAGGCGGCG CGGCCACTGC CATCATCTGC
GACGTCACGG ACGAAGCGCA GGTGATCGAC CTCTGGAACT GCGCGGAGGA GACGGGCCCC
GTCGCGCTGG CCATCTACAA TGCGGGCAAC AACACCCCCG GCAAGATTTC CGGCATGACG
GCCGAGTATT TCGAACGCAG CTGGCGCGTC TGCACCTATG GCGCCTTCCT CTTCGCGCGT
GAGGCGTCGG ACCACATGGC GCCGCGCGGC GAGGGTACGC TCCTCTTCAC GGGCGCTTCC
TCCAGCATGC GGGGCAAGGA AGGCTTTGCC GCCTTCTCCG CCGCCAAGGG CGGGCTTCGC
ACCTTCGCCC AGAGTGCTGC CAAGGAATTC GGCCCCCTCG GCCTCCATGT CGGCCATGTC
GTCATAGATG GCGGCATCTC GGGCGAGAAG CTTCATACGA TGGTGCCGCA ATATGCCGCC
CAGCGGGAAC AGGAGGGCCG GCTCATCGAT CTCGACGGCA TCGCCGATGT CTATATCCAG
CTCCACCGCC AGAAGCGCTC GGCCTGGAGC TTCGAGGTCG ATATCCGCAC CCATGCCGAG
CCCTGGTAG
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| Protein sequence | MAATAIVAGV GPHKGLGAVL SHRAAGEGLH VFVAGRTLEK LEAVAEAIRA EGGAATAIIC
DVTDEAQVID LWNCAEETGP VALAIYNAGN NTPGKISGMT AEYFERSWRV CTYGAFLFAR
EASDHMAPRG EGTLLFTGAS SSMRGKEGFA AFSAAKGGLR TFAQSAAKEF GPLGLHVGHV
VIDGGISGEK LHTMVPQYAA QREQEGRLID LDGIADVYIQ LHRQKRSAWS FEVDIRTHAE
PW
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