| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1657 |
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| Symbol | |
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| ID | 5454851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1790240 |
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| End bp | 1791079 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877231 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001412933 |
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| Protein GI | 154252109 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.869362 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGA AAGAGGGCTA TGTCAGGCCC CTTCCAGCTG AATCGGAAGG CCGGGCGCCG
GGCCGGGGAC GGCTTCAGGG CCGCAGTATT CTCGTGGTAG GCGGCGGACA GCGCGTCCTC
GATGCCGCGA CCGACCCCGT GGGCAATGGC CGCGCCATGT CGCTTCTCTT CGCGCGCGAA
GGCGCGGAAG TCGCCGTGGC CGACATAAAC CTTCCCTCGG CCGAAGAAAC CGTTGCACAG
ATCGTGGGGG AAGGCGGCAA GGGCCACGCG ATAAAGGCCG ACATATCGAA GCCTGACGAC
ATCACCGCGA TGCTTCAGGA AGCCGAAAAG GTGCTCGGCA AGATCGACGG GCTGGTGCTG
AATGTTGGCA TCGGCGCCGG CGGGCTCGGC CTTGAAGGCG CGACGCCCGA AGATTGGGAC
AAGGTTCTCG CCATCAATCT GCGTGGTCCG ATGCTCTGCT GCAAGGCGGC GCTGCCGAAG
CTTGCGGACG GCTCGCCCGT GGTTTTCATT TCATCGATCG CCGGGCTGAT CGCCGGTTCG
CGCCTGCCTG CCTATGACGC ATCCAAGGCA GCCCTTGGCG GCCTGATGCG CCATGTGGCG
CTTGAAGGCT CAAAGCGCGG CATTCGCGCC AACATCGTCG CGCCCGGCCT CGTGGACACG
CCGCTCGGGC GCGTCGCGAC GCAGGGCCGC CCCTCGCGCG GGCGCACGCC TGTGCCTTTC
GGCCGGCAGG CTACCGGCTG GGAGATAGCC TATGCGGCGC TTTTCCTTGT CTCGGACGAA
AGTGTCTATG TGACGGCCCA GACGCTCGCG GTCGATAGCG GGCTTACCGG CATTTCCTGA
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| Protein sequence | MTAKEGYVRP LPAESEGRAP GRGRLQGRSI LVVGGGQRVL DAATDPVGNG RAMSLLFARE
GAEVAVADIN LPSAEETVAQ IVGEGGKGHA IKADISKPDD ITAMLQEAEK VLGKIDGLVL
NVGIGAGGLG LEGATPEDWD KVLAINLRGP MLCCKAALPK LADGSPVVFI SSIAGLIAGS
RLPAYDASKA ALGGLMRHVA LEGSKRGIRA NIVAPGLVDT PLGRVATQGR PSRGRTPVPF
GRQATGWEIA YAALFLVSDE SVYVTAQTLA VDSGLTGIS
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