| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1606 |
|---|
| Symbol | |
|---|
| ID | 5454185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1742747 |
|---|
| End bp | 1743652 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640877179 |
|---|
| Product | 3-hydroxybutyryl-CoA dehydrogenase |
|---|
| Protein accession | YP_001412882 |
|---|
| Protein GI | 154252058 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.926644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA GCAGTTACGA AAGACGGGTA ATGACATTTC GCAAGGTTGG CGTGATCGGC
GCGGGGCAAA TGGGCAACGG TATCGCGCAT GTCTGCGCCC TTGCCGGCTA TCATGTCGGG
CTCTACGACA TCTCGGGCGA CCGCATCCAG GCGGGGCTCG CCACGATCGA CGGCAACCTG
TCGCGGCAGG TATCGAGCGA GCGCATCACC ACCGCCGAGC GCGACGCGGC GCTGGAGCGC
CTGACCGCCG CCGAGACGAT GGAGAGCTTC GAGGACGCCG ACATCGTGAT CGAGTCGGCC
GTCGAGAATG AAGAGATCAA ACGCAAAATT TTCGCCGAAC TCTGTCCGCA TCTGCGCGAG
GACGCGCTGC TTGCGACCAA TACGTCTTCA ATCTCGATCA CACGCCTCGC CGCCTCGACC
GACCGCCCCG AACGCTTCAT GGGCATGCAT TTCATGAACC CGGTGCCGGT GATGGAGCTC
GTCGAACTGG TGCGCGGCAT CGCCACCGAC GATGACACAT TCGACAAGAT CCGGCATTTC
GCCGAGACGC TTGGCAAGAA GATCGCCAAT GCCGAAGATT TTCCGGCCTT TATCGTCAAC
CGCATCCTGC TGCCGATGAT CAACGAGGCG GTCTACACTC TTTATGAGGG CGTGGGCTCG
GTCGAGAGCA TCGACAAGGC GATGAAGCTC GGCGCAAACC ACCCGATGGG ACCGCTGCAG
CTTGCGGACT TTATCGGCCT TGATACCTGC CTTTCGATCA TGCAGGTGCT GCATGACGGA
TTGTCGGATT CCAAATACCG GCCCTGTCCG CTTCTGGTAA AATATGTCGA GGCCGGCTGG
CTCGGCCGCA AAACGCAGCG CGGTTTCTAC GATTATCGGG GCGAAAAGCC GGTGCCGACG
CGCTAG
|
|---|
| Protein sequence | MTSSSYERRV MTFRKVGVIG AGQMGNGIAH VCALAGYHVG LYDISGDRIQ AGLATIDGNL
SRQVSSERIT TAERDAALER LTAAETMESF EDADIVIESA VENEEIKRKI FAELCPHLRE
DALLATNTSS ISITRLAAST DRPERFMGMH FMNPVPVMEL VELVRGIATD DDTFDKIRHF
AETLGKKIAN AEDFPAFIVN RILLPMINEA VYTLYEGVGS VESIDKAMKL GANHPMGPLQ
LADFIGLDTC LSIMQVLHDG LSDSKYRPCP LLVKYVEAGW LGRKTQRGFY DYRGEKPVPT
R
|
|---|
| |