Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1329 |
Symbol | |
ID | 5455854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1464775 |
End bp | 1465509 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640876900 |
Product | extensin family protein |
Protein accession | YP_001412606 |
Protein GI | 154251782 |
COG category | [S] Function unknown |
COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0000000000197088 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | TTGAACGAGA GATTTTCGCC CCGCGCCCGC CGCCTGCTCG CCGTCGCCGG TATCGCTCTC CGCTTCGTCC TTTTCGTCGG CGGCCTCGTC GCCGCCGGCT GGTTCGCCTT CATCTATTTT CCCGATGCCT ATAATCCCTT CGTGCCGCCG GACCTGCGCG AGGAGCCGAA CATCGTCACG CCGCTCAAGC TCAAGGGCCT CGAGGGCGAA TACGACATCT GCATGTCGGT CGTCCGGGCG TCGGGCGCCA AGGCGCGGCG CGACAGCATT TCCTCCCCGT CGGAAGGCTG CGGCATGCCG CAGGGCCTCT ATCTCCAGCA ATCGCAGATC TCTTATGGGG GTGGCATCCG CCTCACCTGC CCGGCCACGG CGGCGCTTCT CATGTGGGAG CGTCATGTCG TGGCGAAGGC AGCCGAAGCC CATTTCGGTT CGGAGGTGAC GCGCGTCCGC CATTTCGGCA CCTATGCCTG CCGCAATGTG AACAATGCCG TGTCGGGCCG CCGCAGCGGC CATGCCGCCG CCAATGCCAT CGACATAGCG GGCTTCGATC TCGCAAACGG CAAAAGCGTC TCGGTCGAGC GCGACTGGGG CAAGGACAGT CCCGAAGGCC GCTTCCTCAC GGAGGTCCAT GACGGCGCCT GCGGCCTCTT CTCCACCGTC CTCGGCCCTG AATACAACGC CCTCCACGGC AATCACTTCC ACTTCGAAAT GACGCGGTGG GGGATGTGCC GGTGA
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Protein sequence | MNERFSPRAR RLLAVAGIAL RFVLFVGGLV AAGWFAFIYF PDAYNPFVPP DLREEPNIVT PLKLKGLEGE YDICMSVVRA SGAKARRDSI SSPSEGCGMP QGLYLQQSQI SYGGGIRLTC PATAALLMWE RHVVAKAAEA HFGSEVTRVR HFGTYACRNV NNAVSGRRSG HAAANAIDIA GFDLANGKSV SVERDWGKDS PEGRFLTEVH DGACGLFSTV LGPEYNALHG NHFHFEMTRW GMCR
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