Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1226 |
Symbol | |
ID | 5454614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1358846 |
End bp | 1361620 |
Gene Length | 2775 bp |
Protein Length | 924 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640876796 |
Product | exonuclease V subunit alpha |
Protein accession | YP_001412503 |
Protein GI | 154251679 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.688264 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGGAG ATCACTCCGA CAGCTTCAAT TTCCTTCAGC GGTTCTGGCC AGATCTCCAT GATCTCGGGA GAAAGGCGGA ACAGGCTGGA CCGCATGAGC CGGACCTCGT GGCCATCCGG CTGCGTGGGC TTACCGAGAC GATGGTCGTC AAACTGTTTG GGCAACTGGG ACTTCAGTAC GACCCGGCGC ATTCGCATTT CGACAGGTTG GTCCTGTTGG AGAATGCAGA CCTGCTCGAC GCCCGTCTCC TTTCCAAATT TCACGCTATC CGGAAGGTCG GCAACAATGC CGCACACAAC GGGAAGGTTA CGCCGGCACA AGCTGAAGCT CTTTTGGAAG ATGCTTGGTC TCTTTCGTGC TGGTTCTGCC GCTTCATGCG TCCCGACATC GAATGGCTGA CTCCAGCGAG GCAGAACGCC AATCCCCTCT CGGTTCCATC CATGGTGGAA ACGCAGGACG TTTCTGCCGA GCGGCAGCCG ACGGTCCCGG GTAAGTCATC GAACATACTC AAGTTTCCCG AGGAGCGCGT CCGGCGCATA CGGGAGCAGG TCTCCCGCGC GATGGCGGAA GTCGATCCGA GGGTGCGCCA ACTTCGGACC AGCATCACAC TTCACGAGGC CTTTACGGAA AGTCTGTCGA GCGACCAAGC CGCCTGCCTC GACGCGCTTT CCACATTCCT CTCCAGTCCG ACGCAGCATG TATTCCTGCT CAAGGGCTAT GCGGGCACCG GCAAGACCTT CCTCGCCAAG GGCATCACCG AATATCTTTC GGCACAGGGT CGCGCTTTCC GCCTCGCAGC ACCGACCGGG CGGGCGGCGA AGATTATCTC GGAGAAGACC GGGCGCGACG CGCGGACGGT GCATAGCCAA ATCTACAACT TCAGCGACCT GAAGGAATAT ACGAAGGGGG ATCAGGAGGT TGGGTCGGAG ACGTTCAAGT TCTATGCGGA GATCGCGGCC AACCAAGATC AGGCCAATAC GGTCTATATC GTGGACGAGG CGTCGCTTCT TTCGGACGTC TATTCGGAGA GCGAGTTCTT CCGATCGGGA ACCGGATACC TGTTGCACGA CCTGATTAGC TATGTCGGAT TCAAGCATGG CGAGACCGAC CGGAAGATTA TCCTCGTAGG CGATCCCGCT CAGCTTCCCC CGGTGGGGAT GTCCGTCTCC CCAGCGCTTG ATACGGAGTA CCTCCACAAG CACCTCGGGT TGGATGCGGC CGAATACGAG TTGAAGGAAG TACTGCGGCA GAAGGCGGAT AGCGGGATTA TCCGTAACGT CATGCCGCTT CGCGATAGCC TTTCAAAGGG CACATTTGGT AGCCTCAGCT TCGAATTCGA CGAAGATGTC CTGCGTCTCC GCGCCGACGA GGTTCTCCCG TTATATATGG CGGCACGCTC TACCGGCGAA GCGAACATTC CGATTGTCAT TACGCGGTCT AACAGCGAAG CGGCCAGTTA CAACCGGGCG ATCCGGGATG CACTTTTCCC CGGACGTGAC TTCGTGGCGG CCGGTGATCG GCTGATCGTC ACCGCCAACG CCGTTGTGAA CGGCAGCTTC CTGGCTAACG GTGAGTTTGT CGATGTCGTC GATGCGGAAA CCATGGTGGA GCGGCGGTCC GTCAATCTCC GATACCGTAA CGAGGAGACC GGGGCAGTCG ACGTCATCGA GGTGTCGTTA GTGTTCCGCG ACATCCAGAT AACCGTTTCG TCGCCAGATG GCGCCGAGAC CGTTCTGACC GCGAAAATCC TCGACGATCA TCTTCACGAT AGCGGGGCCG GGCTCGACGC TGCGCAGCAG CGCGCGCTCT ATGTGGACTT CCTCAAGCGT CACCCTGATT TGAAGCGCGG CCACGACCGA GAACGCCTCA GCCAGATCAT ACGCCAGGAC CCGTACTTTA ACGCGCTCCG CGTAAAGTTC GGCTACGCGG TGACTTGCCA CAAGGCGCAG GGTGGCGAAT GGGGGCATGT GTTCGTGAAT TGCCCGTCTG GCCAGAATCC GAGATCGGCC GAGTATTTCC GTTGGCTCTA TACGGCCATG ACCCGCTCAA GCGGGAAGCT GTATATGATC GACCCGCCCG AAGTCAGGTT GAAGGTCGCC GGACCTGACT GGTGGTCGCC TTCGGAGGTA TCGACGACAT CGACGGATGG GCAGCTCTCG GCAGCTGCGC AGGCGGGAGG CACCGCCTCA ATCATATCGC CCCAGGAGGC ATTCCGCCTC GGTGTTCTGG CGCGCGTGCG GGACCTTCTC GGGGAGACGG GCATCGAGAT CGACGATGTC GCGCATCACC AGTACCAGGA AGCCTTCTAC CTGCGTCGTG ACCTCGACAC CGCCCGCGCT AACATCAGTT ACAATGGCAA GTTCAAGGTT ACAGCGGTGG CTGTTCCTCC CGCAGGCGCT TTCAGCGAGC AGCTAGGCGA GCTTCTTCGG CCGTTGGTCG GTCAGTCCAT TGGCTCGGCA CTGCCAGTCG CCGGCACGGG TGGCTCGTCG GGCCTGCAAT CGCCAAGCCG CCCTTTCCTT GCACAGTTCC ACGACCGCCT GTTGCCTCTT CTCAGGGAAC GCCAAATCCA CATTGTGGGA TTGAAGGAAC AGGCGTGGAG CCAGCGCTAC ACCTTCTCGC GTGGCGGTGA TGCTGCCGTC GTCGATGTCT TCTACGACGG ACGAGATCGG TTCACGAAAT GCATGCCGAT CAACGTCGGG GGAAGGCAGG GCGTCCCAGC GGGTACGTTG TTGCCCGAGG TGCTTGAGAT ACTCACCGCG CAGGTCATCC CGTGA
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Protein sequence | MIGDHSDSFN FLQRFWPDLH DLGRKAEQAG PHEPDLVAIR LRGLTETMVV KLFGQLGLQY DPAHSHFDRL VLLENADLLD ARLLSKFHAI RKVGNNAAHN GKVTPAQAEA LLEDAWSLSC WFCRFMRPDI EWLTPARQNA NPLSVPSMVE TQDVSAERQP TVPGKSSNIL KFPEERVRRI REQVSRAMAE VDPRVRQLRT SITLHEAFTE SLSSDQAACL DALSTFLSSP TQHVFLLKGY AGTGKTFLAK GITEYLSAQG RAFRLAAPTG RAAKIISEKT GRDARTVHSQ IYNFSDLKEY TKGDQEVGSE TFKFYAEIAA NQDQANTVYI VDEASLLSDV YSESEFFRSG TGYLLHDLIS YVGFKHGETD RKIILVGDPA QLPPVGMSVS PALDTEYLHK HLGLDAAEYE LKEVLRQKAD SGIIRNVMPL RDSLSKGTFG SLSFEFDEDV LRLRADEVLP LYMAARSTGE ANIPIVITRS NSEAASYNRA IRDALFPGRD FVAAGDRLIV TANAVVNGSF LANGEFVDVV DAETMVERRS VNLRYRNEET GAVDVIEVSL VFRDIQITVS SPDGAETVLT AKILDDHLHD SGAGLDAAQQ RALYVDFLKR HPDLKRGHDR ERLSQIIRQD PYFNALRVKF GYAVTCHKAQ GGEWGHVFVN CPSGQNPRSA EYFRWLYTAM TRSSGKLYMI DPPEVRLKVA GPDWWSPSEV STTSTDGQLS AAAQAGGTAS IISPQEAFRL GVLARVRDLL GETGIEIDDV AHHQYQEAFY LRRDLDTARA NISYNGKFKV TAVAVPPAGA FSEQLGELLR PLVGQSIGSA LPVAGTGGSS GLQSPSRPFL AQFHDRLLPL LRERQIHIVG LKEQAWSQRY TFSRGGDAAV VDVFYDGRDR FTKCMPINVG GRQGVPAGTL LPEVLEILTA QVIP
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