Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1154 |
Symbol | |
ID | 5455001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1277249 |
End bp | 1279249 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640876724 |
Product | acetoacetyl-CoA synthetase |
Protein accession | YP_001412432 |
Protein GI | 154251608 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.527463 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.586098 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATA TGGGAGACCT GCTCTGGTCG CCGTCCGAGG GGATGGTGGC CGATGCAAAT GTCACCGCCT TCATCGCCTG GCTTAATGCG CGCGGCCATT CCTTTGGCGG CTATGAGGAT TTGCGGCGAT GGTCCGTGGC CGATATTGCG GCGTTCTGGG AGGCGGTCTG GCAGTTCTTC GGGGTCACGT CGTCGACGCC TTACGAATGC GTGCTGCGCG ATGAAAAGAT GCCGGGGGCG GAATGGTTTC CGGGGGCGCG GGTGAACTAC ATCCGGACGC TCCTGTCCAA GGGGAGCGGG AACAAAACCG CGATCCATGC GGCCGGCGAG GAAGGAAAAG CGCGGAAAAT CAGCTGGGAC GAGCTGAAAA CGCAGGTCTT CAAGGTGGCA ACGGCGTTGC GCGAGCTCGG TATCGGACCC GGCGACCGCG TGGTTTCCTA TATGCCGAAC GTGCCGGAAG CGGCGGTTGC GTTCTTCGCG ACGGCGAGCA TCGGCGCGGT GTGGTCGAGC TGTTCGCCGG ATTTCGGGGC GGCGAGCGTG ATCGACCGCT TCAGCCAGAT CGCTCCGAAA CTCCTTTTTG CTACAGACAG TTACCGGTAT GGCGGCAAGA ATTTCGACCG GCGGGCGGAG GTGCGCGCGA TGGTCGACGC CCTGCCCTCG CTGCAGCATG TGGTGCATGT GGCGGGCGCC GATCCGGACT ATGGCAGCGA GCCCCTGACG GCCGAAGCGA TTGCCTGGGG GAAGCTGATT TCGAGACCGG CGGTGAGCGA AACAAGGTTC GTTTTCGAGG ACACGCGCTT CGACCATCCC TTGTGGATCG TCTATTCATC GGGGACGACG GGACTGCCGA AACCGTTTGT CCACGGACAT GGCGGTGTGC TTCTGGAAGC ACTGAAATTC ACGCATTTTC ACCTGAATCT GAAGCCGGAC TCGTGCATGT TCTACTTCAC GACGACGGGC TGGGTGATGT GGAATATCCT CCTGTCAGGG CTTGTCGCGG GGTCTGCGGT GGTGCTTTAC GACGGCAATC CGATGACGCC GAAGCCGGAC CGGTTGTGGG AACTGGCGGC GGAGACGGGC ATGACGCTTT TTGGGGCGAG CCCGACTTTT CTCAATGGAC AGATGAAGTT AGGTATCGTT CCCAACAAGA TTTACGACCT CGAGCGGATG AAGAGCATCC TGCTTGGCGG CTCGCCGGTG ATGCCGGAAC ACATGGAATG GTGCTTCGAA AACCTGCATC CCGACATGTG GGTGACGTCG CAAAGCGGCG GTACGGATGT CGCTTCCGCC TTTGTGGGCG GGGTGCCGAC GCTGCCGGTT CATGCAGGAG AAATCCAGGC GCGGTGCCTC GGCGTCGACG TCCATGCCTT TGACGATAAA GGGGAATCCG TCATCGGGGA GGTTGGCGAG CTGGTGGTCA GCAAACCGAT GCCGTCGATG CCGCTGTTCT TCTGGAACGA CGAGGGCGGG CACCGTTATC ATGATTCCTA TTTCGATACG TATACGGATC ATTGGCGGCA TGGCGACTAC TTCAAGGTCA ATGAACGGGG CGGCTGTTTC ATTCTCGGTC GCTCGGATTC GACGCTGAAC CGCTATGGCG TAAGGATCGG CACGGCGGAA ATTTACCGGA CAATAGAAGG ACTTGAGGAG ATCGAGGACT CGATCATCGT CAATCTCGAC CTGCCCGGCG GAAACTTTTT CATGCCGCTT TTCGTGGTGC TGAAGGACGG CGTGGCGCTC AGCGATGCGG TAAGGGAAAA GATCAACAAA TCGCTGCGGG AAAAGTACTC TCCGCGCCAT GTGCCTGATC GCATTTATGA AATCGACGCG GTGCCCTATA CGCTGACGGG CAAGAAAATG GAGGTGCCGG TGCGCAAGAT ATTGCTCGGT GTGCCGGTGG ACAAGGCGGC GAGCCGCGAC GCCATGGCAA ACCCTTCTGC CATCGACTAT TTTCGCGATT TCGCGGCGAC GCAGACCGAG TATTCGACGG CCGCGGACTG A
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Protein sequence | MANMGDLLWS PSEGMVADAN VTAFIAWLNA RGHSFGGYED LRRWSVADIA AFWEAVWQFF GVTSSTPYEC VLRDEKMPGA EWFPGARVNY IRTLLSKGSG NKTAIHAAGE EGKARKISWD ELKTQVFKVA TALRELGIGP GDRVVSYMPN VPEAAVAFFA TASIGAVWSS CSPDFGAASV IDRFSQIAPK LLFATDSYRY GGKNFDRRAE VRAMVDALPS LQHVVHVAGA DPDYGSEPLT AEAIAWGKLI SRPAVSETRF VFEDTRFDHP LWIVYSSGTT GLPKPFVHGH GGVLLEALKF THFHLNLKPD SCMFYFTTTG WVMWNILLSG LVAGSAVVLY DGNPMTPKPD RLWELAAETG MTLFGASPTF LNGQMKLGIV PNKIYDLERM KSILLGGSPV MPEHMEWCFE NLHPDMWVTS QSGGTDVASA FVGGVPTLPV HAGEIQARCL GVDVHAFDDK GESVIGEVGE LVVSKPMPSM PLFFWNDEGG HRYHDSYFDT YTDHWRHGDY FKVNERGGCF ILGRSDSTLN RYGVRIGTAE IYRTIEGLEE IEDSIIVNLD LPGGNFFMPL FVVLKDGVAL SDAVREKINK SLREKYSPRH VPDRIYEIDA VPYTLTGKKM EVPVRKILLG VPVDKAASRD AMANPSAIDY FRDFAATQTE YSTAAD
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