Gene Plav_1089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1089 
Symbol 
ID5453544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1194718 
End bp1195401 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content64% 
IMG OID640876659 
Productphosphoglycolate phosphatase 
Protein accessionYP_001412367 
Protein GI154251543 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.396739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACCAC GCCCTGTCCT GCTTTTCGAT CTCGACGGTA CGCTCGCCGA TACGGCGGCG 
GATCTCTGCG AGACAATGAA TGTCGTCCTG GAGATGCATG GCCGGGGCCG CGTGCCGGAA
GCACGGGTGC GGCATCTTGT GGGCGGCGGC GCACGGCTGC TGCTGGACCG GGGCTTCCGC
GAGACGGGAG ACCCTGCAAG CGAGGAAGAA CTCGACCGGA GCTTCGAGGA ATTCATCGCC
TATTACGGCA AGCACATCGC CGACCACACG AAGCTCTGGC CGGGGGTACG CGATGTGCTC
GACAGGCTGG AGGCGCGCGG CGCACTGATG GCCGTCTGCA CCAACAAGGT GGAGCATCTG
TCGCGGAGCC TTCTGGAGAT GCTCGCCATC GACCATTATT TCCCGGTCGT GATCGGCGGC
GATACGCTGG CGGTGAAGAA GCCGGACCCG GAACATCTGT TCGAGGCGAT CCGGCTGCTC
GGCGGCGACA GGGCGCATGC GCTGATGGTA GGCGACAGCG AGACGGATAT CGACGCGGCG
AAGAACGCCG GGCTGCCTTC GATCTGTGTC AGCTTCGGCT ATACGCGCAT ACCCGTGCCC
GAACTCGGCG CGGATGCGGT GATCGATCAT TTCGATCAGT TCGATGCGGC GCTGGCGAAG
CTGATGCCGG CGCATTTCGG CTAG
 
Protein sequence
MSPRPVLLFD LDGTLADTAA DLCETMNVVL EMHGRGRVPE ARVRHLVGGG ARLLLDRGFR 
ETGDPASEEE LDRSFEEFIA YYGKHIADHT KLWPGVRDVL DRLEARGALM AVCTNKVEHL
SRSLLEMLAI DHYFPVVIGG DTLAVKKPDP EHLFEAIRLL GGDRAHALMV GDSETDIDAA
KNAGLPSICV SFGYTRIPVP ELGADAVIDH FDQFDAALAK LMPAHFG