| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1067 |
|---|
| Symbol | |
|---|
| ID | 5456595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1173135 |
|---|
| End bp | 1174040 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640876637 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001412346 |
|---|
| Protein GI | 154251522 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC GTTTTGACGG CAAGGTCGCC ATCGTGACGG GCGCCGGTGG CGGCCTTGGC
CGTTCCCATG CGCTGGAACT CGCGCGGCGC GGCGCCAAGG TTGTCGTGAA CGACCTCGGC
GGCGACCGGA CCGGCGCCGG CGGCTCTTCC GATGCGGCCA ACAAGGTGGT CGAGGAAATC
AAGGCGCTGG GCGGCGAGGC GATCGCCAAT GGTTCGTCGG TGACCGACGA TCAGGGCGTC
GAGAACATGG TCAAGCAGAC CATGGACAAG TTCGGCCGCA TCGACATTCT CATCAACAAT
GCCGGCATTC TTCGCGACAA GTCGTTTTCG AAGATGACGA TGGAAGACTT CCAGCTCGTG
GTCGACGTGC ATCTGATGGG CACCGTAAAG CCGACCAAGG CAGTGTGGGA AATCATGAAG
AGCCAGAACT ACGGCCGCAT CATGGTGACA GCCTCCTCCA CCGGCCTCTA CGGCAATTTC
GGCCAGACGA ACTACGGCGC GGCGAAGCTT GCCGTTGTCG GCTTCATCAA TACGCTGAAG
CTTGAAGGCC AGAAGAACAA CATTCACTGC AACGCGCTGG CGCCTGTCGC CTATACGCGG
ATGACCTCCG ACCTGATGCC GCCGGAAGCC GAGCAGATGC TGACGCCGGA AAGCGTTTCG
CCGGGCGTCA TGTTCCTCGT TTCGGAAGAC GCACCGACCG GCATGATCCT TTGTGCAGGC
GCCGGCGTGT TCGCCGCCGC GCGCATGGAA GAGGCTGAAG GCATTTTCCT CGGGCGCGAA
GACCTCACAG CCGAGAAGGT TGCCGAGAAT TGGGGAAAGA TTTCCGACTT CTCGAACGCT
GCGCCTTTCT TCATGGGCGG CGAGCAGACG GGCAAGTTCT TCAAGCTGGC GACGGGCGGC
AAGTAA
|
|---|
| Protein sequence | MSIRFDGKVA IVTGAGGGLG RSHALELARR GAKVVVNDLG GDRTGAGGSS DAANKVVEEI
KALGGEAIAN GSSVTDDQGV ENMVKQTMDK FGRIDILINN AGILRDKSFS KMTMEDFQLV
VDVHLMGTVK PTKAVWEIMK SQNYGRIMVT ASSTGLYGNF GQTNYGAAKL AVVGFINTLK
LEGQKNNIHC NALAPVAYTR MTSDLMPPEA EQMLTPESVS PGVMFLVSED APTGMILCAG
AGVFAAARME EAEGIFLGRE DLTAEKVAEN WGKISDFSNA APFFMGGEQT GKFFKLATGG
K
|
|---|
| |