| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1066 |
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| Symbol | |
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| ID | 5456352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1171157 |
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| End bp | 1173058 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876636 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001412345 |
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| Protein GI | 154251521 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components
[COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC GGGCCTCCCT TGCTCTTGCG GCGCTTTTTC TTTCGGTTTG GGGCTTTCCT
TCGGGTGCCG CAGCCGCGCC GTCATGCGCG ATCGACCGGC CGGTGATGTT TGGCGGGCTC
GACTGGGATT CCAACGCCTT CCACACCGAA CTCGCGCGCC TCATCATCGA GCGCGGCTAT
GGCTGCGAAA CGGATGTGCT GCCGGGCTCG ACGCTGCCGC TGGTGACGGG GCTCGGACAA
GGCGACATCG ACGTGCTGAT GGAAATCTGG CGCGACAATG TGACTGAGCC GTGGAACGAG
GCGCTGGAAG CCGGGACCGT GGTTTCGCTC GGCACGAATT TTCCGGATGC GGTGCAGGGC
TGGTACGTGC CGCGCTATGT GATCGAAGGG GATGCGGCGC GCGGCATCGA GCCGATGGCG
CCGGATCTCC GGTCCGTCTC CGACCTCAAG CAGCATGCCG CTCTCTTTCG TGACCCGGAG
CAGCCGGGCA AGGGGCGCTT CTACAATTGC ATTCTCGGCT GGAGCTGCGA GGAGCAGAGC
ACACGCAAGC TTGAGGGGTA TGGGCTCGAC CGCTTCTACA CGAACTTCAG GCCCGGAACC
GGGGCGGCGC TTGCGGCTGC CATCGCATCC GCCTATGAGC GCGGCGAGCC GGTCGTCGCC
TATTACTGGG GACCGACATG GGTTCTCGGC ACGTACGATC TCGTGAAGCT CGAAGAGCCC
CCATATTCGG AAGAGGCCTG GAACGCCTTC AACGCCGACC CGAAGCGGAA CCCGCCCGTC
GCCTTTCCAA CCGTCGAGGT CATCATCGGC GCCAATGCCC GTTTCGCGGA GAGGGCTCCC
GAGATCACGG CCTTCCTGCG CGCATATGAG ACGACGGGGC AGATGACGAG CGAGGCGCTC
GCCTATATGC AGGCGAACAG CGAGGCGTCG GCGCGGGACG CGGCGTTGCA CTTCATCGAG
ACACGGCCGG ACATCTGGCG GCAATGGGTG ACGCCCGAGA TTGCGGCGCG GGTGACCGGC
GAACGGGAAG CGGAAGCGAG GAGCTTTCCC GTTGCTCTCG AATTTCCCGT CGAGGCCTGG
GTCAATCGCG CGATGAAGAA CTTCGTTGCC GATTACGGCA ACGCTTTCCA TGCGGCGAGC
GGCTGGCTGC TCGCGCTTAT CGTGGCGCTG GAGGCCGGGC TCGGTGCCCT GCCCTGGTGG
CTCATCATTC TCGCGGTGGC CGGCGCAGCC TGGCATGCCT CGCGCCATTT TGCGTTGCCC
GTCATACTGG CGGGATTGCT GTTTCTGATC GGCACTCTCG GTCTCTGGGA CCTCGCGATC
CAGACTTTGG CCCTGATGCT CGTGTCGGTC TTCTTCGCTG TGCTGATCGG GCTGCCTTCG
GGGATTGCGA TCGCCGCCAG CGATATTGCT CGACGGATCG TTCTGCCGGT GCTCGACGCG
ATGCAGACGC TACCAAGCTT CGTCTATCTC ATTCCGGCGC TGATGCTGTT CGGGCTCGGC
AAGGTGCCTG CGCTCTTTGC AACCGTCATC TATGCAACGC CGCCGCTAAT CCGCCTGGTC
GATCTGGGTT TGCGGACCGT GGACCGGCAA CTGGTGGAAA TGGCGGCTGA TCTGGGCGCA
GACAAGTGGC GGCAGCTCAT CGACATCAAA TTGCCGCTGG CGCTGCCGAG CATCATGGCG
GGCGTCAACC AGACGACGAT GATGGCGCTT TCCATGGTCG TCATCGCGTC GATGATCGGG
GCGCGCGGGC TCGGCGAGGA AGTGCTGCTC GGCATCCAGC GGCTCGATAT CGGGCGCGGG
CTGGCGGCGG GCATCGCGAT CGTCGCTCTC GCCATCGTGT TCGACCGGAT CACGCAGGCT
TATGGGCGCG TGAACCGCAA AGACGCGCCG CCGGGGCGCT AG
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| Protein sequence | MLNRASLALA ALFLSVWGFP SGAAAAPSCA IDRPVMFGGL DWDSNAFHTE LARLIIERGY
GCETDVLPGS TLPLVTGLGQ GDIDVLMEIW RDNVTEPWNE ALEAGTVVSL GTNFPDAVQG
WYVPRYVIEG DAARGIEPMA PDLRSVSDLK QHAALFRDPE QPGKGRFYNC ILGWSCEEQS
TRKLEGYGLD RFYTNFRPGT GAALAAAIAS AYERGEPVVA YYWGPTWVLG TYDLVKLEEP
PYSEEAWNAF NADPKRNPPV AFPTVEVIIG ANARFAERAP EITAFLRAYE TTGQMTSEAL
AYMQANSEAS ARDAALHFIE TRPDIWRQWV TPEIAARVTG EREAEARSFP VALEFPVEAW
VNRAMKNFVA DYGNAFHAAS GWLLALIVAL EAGLGALPWW LIILAVAGAA WHASRHFALP
VILAGLLFLI GTLGLWDLAI QTLALMLVSV FFAVLIGLPS GIAIAASDIA RRIVLPVLDA
MQTLPSFVYL IPALMLFGLG KVPALFATVI YATPPLIRLV DLGLRTVDRQ LVEMAADLGA
DKWRQLIDIK LPLALPSIMA GVNQTTMMAL SMVVIASMIG ARGLGEEVLL GIQRLDIGRG
LAAGIAIVAL AIVFDRITQA YGRVNRKDAP PGR
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