| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1003 |
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| Symbol | |
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| ID | 5456439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1095131 |
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| End bp | 1096450 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876574 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001412283 |
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| Protein GI | 154251459 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACCC GCCTCCTCAT GAATGCCGCC CCCGCGATCC TCGATCCCGT ACGCGGGCCG
AAACAGGCCG TGCTCACGCT GCTCGGCGTC GTCGCCGGGC TCTTCTTCTT TCTGCTTCTC
TGGTCCGCCT TCGCCCATAT CGACGTCACC GCGAGCGGCG AGGGCGCGGT CGTTCCCTCG
AGCCACATTC AGGTCGTGCA GAACCTCGAA GGCGGCATTC TTCGCAAGGT ACTGGTCCGC
GAAGGCGATC GCGTCTCGGA AGGCGATGTC GTCGCTCAGA TCGACAATAC AGGCGCTCTC
TCCTCCTACC GCGAGGATCT GAGTACCTTC CGCGCCATGC AGGCCTCCGC CGCGCGTCTT
TCAGCGGAAG CGTCCGGCGC GCCGCTCGCC TTCCCGGTGG ATCTGCTCGA CGCCGAGGAA
AGCGCCGCCC TTATCGCCGC CGAAACCTCA CTCTATGAAA GCCGTATGTC AGGCCTTACC
GATGCCGTCG CCGTTTTCGA GCGTCAGGAG GAACAGGCCC GCGAAACCAT CATGGAAGCG
ACGGAGCGGA TCGGCCATCT CGAAGACAAG CGGCGCTCGC TCGCCGCGGA GCACAGTCTC
GTTTCGCGTC AGGTCCGTGA CGGGCTCATG TCCGTCGTCG AGAAACTGAA GCTCGAACGC
ATGCTCGCTG AAACCGACGA AGCACTGTCG AAGGCGCGCG GCGACATCAG GGCCGCCGAG
ATCGAACTGC AGGAGCTTGC CTCGCGTATC GCCGAGCGCC GCTCCACCTT CGTCAGTGAG
GCCCGTGAAC AACTTGGCCG CGCCAATGCC GAAGTCGCCG CCCTGTCGCA GCGCCTCATT
GCCCATCGCG ACCGTGTCGG CCGCCGCGAC GTGCGCGCGC CCGCCAATGG CATCGTGAAG
CGCGTCGCGA CGCTCACATC GGGCGCCGTC ATAGAACCCG GCGGTACCAT CATGGAAATC
GTGCCCCTCG ACGACACACT CTTCATCGAG GCCCGCATGG CACCAGCCGA CATCGCCTTC
ATCCATGCCG GTCAGGAAGC GAAGGTGCGC ATCACCGCCT ATGACTTCTC CGTCTATGGC
GCGTTGCCCG GCCGCGTCGA GCGCGTCGGC GCCGATACGC AGATGACCCA GGAGGGTGCT
CATTACTTCC CCGTCACGGT CAGTGTCGAC CACGCCGCGC TCGAAGACCG TCAGGCGGAA
CTTCCCATCA TTCCGGGCAT GATCTCGCAG GTCAGCGTCA TCACGGGCGA CCGCACGATC
CTCGGCTATC TCCTGAAGCC AGTTCTGAAG CTCAAGGAAC GTGCCCTGCA GGAACGCTGA
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| Protein sequence | MSTRLLMNAA PAILDPVRGP KQAVLTLLGV VAGLFFFLLL WSAFAHIDVT ASGEGAVVPS
SHIQVVQNLE GGILRKVLVR EGDRVSEGDV VAQIDNTGAL SSYREDLSTF RAMQASAARL
SAEASGAPLA FPVDLLDAEE SAALIAAETS LYESRMSGLT DAVAVFERQE EQARETIMEA
TERIGHLEDK RRSLAAEHSL VSRQVRDGLM SVVEKLKLER MLAETDEALS KARGDIRAAE
IELQELASRI AERRSTFVSE AREQLGRANA EVAALSQRLI AHRDRVGRRD VRAPANGIVK
RVATLTSGAV IEPGGTIMEI VPLDDTLFIE ARMAPADIAF IHAGQEAKVR ITAYDFSVYG
ALPGRVERVG ADTQMTQEGA HYFPVTVSVD HAALEDRQAE LPIIPGMISQ VSVITGDRTI
LGYLLKPVLK LKERALQER
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