| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0938 |
|---|
| Symbol | |
|---|
| ID | 5456918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1008149 |
|---|
| End bp | 1009231 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640876509 |
|---|
| Product | tetratricopeptide domain-containing protein |
|---|
| Protein accession | YP_001412218 |
|---|
| Protein GI | 154251394 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.70703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAATA TCCTGCTTTT TCTTGCTTTC GCAGCGCTGA CCGGAGGTGC GCTGCTGCTG
CTGCTCCGGC CGTTGCGCGC CGGCGCGGCC GCATCGCGCC AAGGGGCGGG CGAGAGCGAG
GTTGCGCTTT ACCGCGACCA GCTGGCCGAG ATTTCGCGCG ACCTCGAGCG GGGCGTGATC
GGCGAGACGG AAGCGGATGC CGCACGCATC GAAGTATCGC GCCGTCTCCT TGCGGCAGAT
GAGGCCCGCG CCGTGGAACG AGGCATGGCC GGTGCCGCCG ATCCCCGCTG GCGCAAGGGC
GCGGCACTGG CCATGGCCGT CGGGATCCCG ATGATTGCGC TTGCGATTTA TCTCGACGCG
GGTTCGCCCG GGCTTCCCGG GCAACCCTTC GCGGAACGCT TGGCCACGCC GGCGGACGAA
TTGCCGCTCG AAGGTCTCAT CGTTCGCATC GAGCGTCATT TGAAGGAGCA GCCCGATGAT
GTACGCGGCT GGGAATTGAT AGCACCAGCC TATCTGCAAC TCGGCCGTTT CGACGATGCA
GCGAATGCCT GGACGCGCGC CATGCTGATC GATGGCGTGA CGGCGGATCG TCTCGTTGCG
CGGGGAGAAG CAAGAGCGTT CGCCAATGAG AACGCTGTCG GTTCCGCCGC CCGAGCTGAC
TTCGAAAAGG CAGTCGAACT CGATCCGGCT CACCCGCGCG CGCAATACTT CCTCGGCGTC
GCCGAACTCG ATGCCGGAGA AAGGGACGCT GCGCTTGCCC GCTGGAAGGC TTTGCTCGCG
CGCGCGCCAG ACGATGCCGC TTGGGCGGCG GGCCTTCGCA TCCGCATTGC CGAAATCGAA
GGCAAGCCGG CTATTTCTCC CGAAGACGAA CCCATGATTC GCGGCATGGT CGAGGGGCTC
GCCGCCCGGC TGGAGGATGA CCCACGCAAT CTCGAAGGCT GGCTCCGCCT CATCCGCTCT
TATGGTGTGC TGGGAGAGCG CGCGCGGGCG GCCGATGCGC TCGCAACCGC CCGCGCAACC
TTTGCCGGTG ATCCTGCCGC GCTTGAGCAG CTGAAAAGCG CCGAAACCGC TCTCCCTGAG
TAA
|
|---|
| Protein sequence | MANILLFLAF AALTGGALLL LLRPLRAGAA ASRQGAGESE VALYRDQLAE ISRDLERGVI
GETEADAARI EVSRRLLAAD EARAVERGMA GAADPRWRKG AALAMAVGIP MIALAIYLDA
GSPGLPGQPF AERLATPADE LPLEGLIVRI ERHLKEQPDD VRGWELIAPA YLQLGRFDDA
ANAWTRAMLI DGVTADRLVA RGEARAFANE NAVGSAARAD FEKAVELDPA HPRAQYFLGV
AELDAGERDA ALARWKALLA RAPDDAAWAA GLRIRIAEIE GKPAISPEDE PMIRGMVEGL
AARLEDDPRN LEGWLRLIRS YGVLGERARA ADALATARAT FAGDPAALEQ LKSAETALPE
|
|---|
| |