| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0714 |
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| Symbol | |
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| ID | 5454188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 773348 |
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| End bp | 776557 |
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| Gene Length | 3210 bp |
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| Protein Length | 1069 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640876283 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001411994 |
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| Protein GI | 154251170 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 67 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCT CCAGGTTCTT CATCGACCGC CCGATCTTTG CAGGTGTGCT GTCGATCATG
ATCTTCCTCG CGGGTCTGCT CGCCATGCCG AACCTGCCGA TCTCCGAATA TCCCGAAGTC
GTGCCGCCCA CCGTCGTGGT CCGCGCGCAA TATCCCGGCG CCAATCCCAA GGTGATCGCG
GAAACGGTTG CAACGCCGCT TGAGGAATCC ATCAATGGCG TCGAGGACAT GCTCTACATG
TCGAGCCAGG CGACGACCGA CGGGTTGATG ACGCTCACCG TCACTTTCCG CCTCGGCGCC
GATCCCGACA AGGCGCAGCA GCTCGTGCAG AACCGCGTCT CCCAGGCCGA GCCGCGCCTG
CCGGAAGAAG TCCGCCGCCT CGGCGTCACC ACCATCAAGA GCTCGCCCGA CCTCACCATG
GTCGTCCACC TGACCTCGCC GAACGACCGC TACGACATGA CCTATCTGCG CAACTACGCC
GTCCTCAACG TGAAGGACCG GCTGGCGCGG ATCGAGGGTG TCGGCGAAGT GGGCCTCTTC
GGCTCCGGCG ACTATTCCAT GCGCATATGG CTCGACCCGC AGAAGATCGC GGAGCGCAAT
CTTTCCGCCG GCGATGTCGT GCAGGAAATC CGCTCGCAGA ACGTGCAGGC GGCGGCCGGC
ATCATCGGTG GCTCGCCCTC GCTGCCCGGC ATCGACCTGC AGCTTTCGGT GAATGCGCAA
GGCCGCCTCC AGACGCCGGA GGAATTCGGC GAGATCATCG TCAAGACGGG CGAAAACGGA
GAGGTCACGC GGCTTCGCGA TATTTCGCGC ATCGAGCTTG GCGCCGCGGA ATATGCGCTT
CGTTCGCTCC TCAACAACAA GAGCGCCGTC GCCATTCCGA TCTTTCAGGC GCCCGGCTCA
AACGCGATCC GGATTTCCGA CAATGTCCGC GAGACGATGG CGGAGCTGAA GGAACACATG
CCGGAAGGCG TCGACTACTC GATCGTCTAC GATCCGACGC AGTTCGTGCG TGCCTCCATC
GAGGCGGTGA TCCACACATT GCTCGAAGCG GTGGCGCTCG TCGTCCTCGT CGTCATCCTC
TTCCTGCAGA CATGGCGTGC CTCGATCATC CCGCTGCTCG CGGTTCCCGT CTCGATCATC
GGCACCTTCG CCGTCATGTA TCTCTTCGGC TTCTCGATCA ATGCCTTGAG CCTCTTCGGC
CTCGTGCTCG CCATCGGCAT CGTCGTCGAT GACGCCATCG TCGTGGTGGA AAATGTCGAG
CGCAATATCG AGCGCGGCCT CAAGCCCTTG CAGGCAAGCT ATCAGGCCAT GCGCGAAGTC
TCGGGTCCGA TCGTTGCCAT CGCGCTCGTC CTCGTCGCGG TCTTCGTGCC GCTGGCCATG
ATCTCCGGCC TTACCGGCCA GTTCTACCGC CAGTTCGCGC TCACCATCGC GATCTCGACG
GTGATCTCGG CAATCAACTC GCTGACGCTG TCGCCCGCGC TCGCGGCGCT TCTGCTCAAG
GGCCATGACG CGCCGAAGGA TGGGCTGACG CGCTTCATGG ATCGCTGGCT CGGCTGGCTC
TTCCGCCGCT TCAACGCGCT TTTCTCGCGC GGTTCGGAAG CCTATGGCCG TGGCGTCACC
GGCGTCCTTT CGCGCAAGGC CGCTACGATG GGTGTCTATC TCGTGCTCGT CGCGCTCGCG
GCGCTGATGT TCCGCGTCGT GCCGGGCGGT TTCGTGCCGG CGCAGGACAA GCAATATCTT
GTCGGCTTCG CACAACTGCC CGACGGCGCC ACGCTCGACC GCACGGAGGA TGTCATTCGC
CGCATGGGCG AGATCGCGCT CGAACAGCCG GGCGTCGTCA ATGCCATCCA GTTCCCCGGC
CTCTCGATCA ACGGCTTCAC CAACAGTGCC AATGCCGGCA TCGTCTTTCT CGGCCTCGAC
GAGTTCGACA AGCGCAAGGA CCCTGCCCTC AGCGGCATCG CCATTGCCGA ACAATTGAAC
GAGAAGTTCG GCGGCATACA GGATGCCTAT ATCGCCATGT TCCCGCCGCC GCCCGTTCAG
GGCCTCGGCA CGATCGGCGG CTTCAAGCTG CAGATCGAGG ACAGGACAGG GCGCGGCTAT
GCCGAGCTCG ATACCGTGAC CAAGGCGTTC CTCGCCGCCG CCGAGAAGGC GCCGGAGCTG
ACGGGCCTCT TCTCCAGCTA TCAGGTGAAC GTGCCGCAAC TCTATGTCGA TCTCGACCGC
ACACGCGCAC GCCAGCTCGG CGTTCCCGTG ACCAGCGTCT TCGAGACGAT GCAGGTCTAT
CTCGGCTCGC TCTATGTGAA CGACTTCAAC GTCTTCGGCC GCACCTATTC GGTGCGCGCT
CAGGCCGATG CCGCCTATCG CGCGCGGCCG GAGGATATCG GCAAGCTCCA GGTGCGTTCC
AATTCCGGCG AGATGGTGCC GCTCTCCGCC CTTGTCCGCG TGCAGTCGAG CACGGGGCCG
GAGCGTGCCT TGCGCTATAA CGGCTTCCCC TCGGCGGATG TGAATGGCGG GGCCGCGCCC
GGCTATTCGA CCGGCGAGGC GCAGGCCGCC GTCGCGCGCA TCGCCGCCGA AACGCTGCCC
AAGGGTTTCG AATATGAATG GACGGAGCTC ACCTATCAGG AAATCCTGGC GGGCAATTCC
GCGATCCTCG TCTTCCCGAT CGCGATCTTC CTCGTCTTCC TGGTGCTGGC CGCGCAGTAT
GAAAGCCTGA CGCTACCGCT CTCGATCATC ATGATCGTGC CGACGGGCCT TCTCGCCGCG
ATGACCGGCG TCTGGCTTTC GGCGGGCGAC AACAACGTCT TCACGCAGAT AGGCCTCATC
GTCCTTGTCG GTTTGTCGGC GAAGAACGCC ATCCTGATCG TCGAATTCGC GCGCGAGCTC
GAATTCGCGG GGCGCTCGCC CTATCAGGCG GCGGTCGAGG CGAGCCGCCT TCGCCTGCGG
CCGATCCTGA TGACGTCGAT CGCCTTCATC ATGGGCGTGC TGCCGCTCGC CACCTCGACG
GGTGCGGGCG CGGAGATGCG CAACGCCATG GGCATCGCCG TACTCTCCGG CATGCTCGGC
GTCACGATCT TCGGCATCTT CCTGACGCCC GTCTTCTACG TGCTGCTCCG CCGTCTCACC
GGCAACAGGC CGCTCCGCCA GCATGGCGAG GCGCTCGATA TCGGTGAGCC CGGCGGCAAC
GAGGTATCGG GTGGCCACCA GACCGCCTGA
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| Protein sequence | MNISRFFIDR PIFAGVLSIM IFLAGLLAMP NLPISEYPEV VPPTVVVRAQ YPGANPKVIA
ETVATPLEES INGVEDMLYM SSQATTDGLM TLTVTFRLGA DPDKAQQLVQ NRVSQAEPRL
PEEVRRLGVT TIKSSPDLTM VVHLTSPNDR YDMTYLRNYA VLNVKDRLAR IEGVGEVGLF
GSGDYSMRIW LDPQKIAERN LSAGDVVQEI RSQNVQAAAG IIGGSPSLPG IDLQLSVNAQ
GRLQTPEEFG EIIVKTGENG EVTRLRDISR IELGAAEYAL RSLLNNKSAV AIPIFQAPGS
NAIRISDNVR ETMAELKEHM PEGVDYSIVY DPTQFVRASI EAVIHTLLEA VALVVLVVIL
FLQTWRASII PLLAVPVSII GTFAVMYLFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIERGLKPL QASYQAMREV SGPIVAIALV LVAVFVPLAM ISGLTGQFYR QFALTIAIST
VISAINSLTL SPALAALLLK GHDAPKDGLT RFMDRWLGWL FRRFNALFSR GSEAYGRGVT
GVLSRKAATM GVYLVLVALA ALMFRVVPGG FVPAQDKQYL VGFAQLPDGA TLDRTEDVIR
RMGEIALEQP GVVNAIQFPG LSINGFTNSA NAGIVFLGLD EFDKRKDPAL SGIAIAEQLN
EKFGGIQDAY IAMFPPPPVQ GLGTIGGFKL QIEDRTGRGY AELDTVTKAF LAAAEKAPEL
TGLFSSYQVN VPQLYVDLDR TRARQLGVPV TSVFETMQVY LGSLYVNDFN VFGRTYSVRA
QADAAYRARP EDIGKLQVRS NSGEMVPLSA LVRVQSSTGP ERALRYNGFP SADVNGGAAP
GYSTGEAQAA VARIAAETLP KGFEYEWTEL TYQEILAGNS AILVFPIAIF LVFLVLAAQY
ESLTLPLSII MIVPTGLLAA MTGVWLSAGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRSPYQA AVEASRLRLR PILMTSIAFI MGVLPLATST GAGAEMRNAM GIAVLSGMLG
VTIFGIFLTP VFYVLLRRLT GNRPLRQHGE ALDIGEPGGN EVSGGHQTA
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