Gene Plav_0571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0571 
Symbol 
ID5454448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp628736 
End bp629935 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content65% 
IMG OID640876140 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_001411851 
Protein GI154251027 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0910669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCAT CCAGCCCGCG CGGAAGCCGC ATCGGCTTTG TCGTCATTCT CGGTGCCTTG 
ATCGCCTTCG CGCCGCTCTC GATCGACATG TATCTGCCGG CCTTCCCCGC CATCGCCGCG
CATTTCAATA CGACCGCGGG CGCGGTGCAG ATGACGCTTG CCGTTTTCTT CATCGGCTTG
TCCGTGGGGC AGGGCGTCGT GGGACCCATT ACGGACCGTG TCGGCCGCCT GCCGCCGCTT
CTCATAGGCA TCGGCCTTTA TGTCGGCGCA TCGATATGGG CGGCTCTCGC CCCCGACATC
GAAAGCCTCA CCGCCGCGCG GCTGTTTCAG GCGCTGGGCG GCTGCGCGGG CATCGTCGTC
TCGCGCGCCA TGGTGCGCGA TCTCTTCGAT GAGCGCGGCT CGGCGCAGGT CTATTCGCTG
CTGATGCTGG TGATGGGCCT CGCGCCCATT CTCGCGCCGA TGATCGGCGG CTTCATCATC
CTGCATCACG ACTGGCACAT GATCTTCTGG GTGCTGGCCG CCTTCGGGCT GGCTTGCGTT
CCCGCCGTTA TTTTCGGCCT TGGCGAAACA CTGCCGCGCG AACGGCGGCA GCATGGCGGG
CTTCGCCCCG TACTCGGCGC TTATCTGGCG CTTTTTGCCG ACCGGCCCTT CATGGGTTTC
GCGCTCGCCA ACGCTTTCAT CTCGGCGGCG ATGTTCGCCT ATATCACCGG CTCGCCCTTC
GTCTTCATCG AGCTTCACGG CCTCGATCCC TCCGGCTATG CCATGCTGTT CGGCGCGAAT
GCGGCGGGCC TCATATTCGC ATCGCAGGTA AACGCATTCC TGCTGCGGCG GATTTCGGGC
CGCCTCATCC TGAAGATCGC GATGGGTGTT CATCTCGCCG CCGTGGTGGC GCTGCTCGGT
TTCACCATCT TCATGCCCGG CGCATTCTAT CCGCTTGCCG CCTGCATCTT CGTCGCGGTC
GGATGCCTCG GCTTTGTCGG CGCGAATGCG ACGGCGGCGG CGATGGCGCG GGCGGACAGC
CATATCGGTT CGGCATCCGC GCTGACCGGC ATCCTGCAAT TCGCATTGGC GGCCGTCTCC
GGCGGACTGG TCGGCGCGTT CAATGACGGC ACGGCACTGC CGATGGCGCT GATCATTGCC
GGAGCGAGCA TCGCGGCGAC GCTGGCGCGG CTCTCGGCCA GGGAACGCGT GCCGGCCTGA
 
Protein sequence
MNASSPRGSR IGFVVILGAL IAFAPLSIDM YLPAFPAIAA HFNTTAGAVQ MTLAVFFIGL 
SVGQGVVGPI TDRVGRLPPL LIGIGLYVGA SIWAALAPDI ESLTAARLFQ ALGGCAGIVV
SRAMVRDLFD ERGSAQVYSL LMLVMGLAPI LAPMIGGFII LHHDWHMIFW VLAAFGLACV
PAVIFGLGET LPRERRQHGG LRPVLGAYLA LFADRPFMGF ALANAFISAA MFAYITGSPF
VFIELHGLDP SGYAMLFGAN AAGLIFASQV NAFLLRRISG RLILKIAMGV HLAAVVALLG
FTIFMPGAFY PLAACIFVAV GCLGFVGANA TAAAMARADS HIGSASALTG ILQFALAAVS
GGLVGAFNDG TALPMALIIA GASIAATLAR LSARERVPA