Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0542 |
Symbol | |
ID | 5456744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 587813 |
End bp | 590011 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640876110 |
Product | 1,4-alpha-glucan branching enzyme |
Protein accession | YP_001411822 |
Protein GI | 154250998 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.217591 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 0.258391 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGGCG GCGACAGGCT CGAATATGCG GCGGGGGCTC TGCTCGAAGG GCGTTTGACC GATCCGTTCG CGCTGCTCGG ACCGCATGCT CAGGATGATG GATATGTCGT CCGTACATTT CAGCCGGGCG CGGAAAGTGT GTCACTTATC GCGCGCTCCG GCGGCGAGGA CATCGGCACG CTCGAGGAGA TTTCGGACGG GCTCTTTGCG GGCCGGATGA AGGAGGACAA GCCCTATAGC TTGCGCATCC TCTGGCCCGG CGGTGCGGTG CAGGAGGTCG AGGATGCCTA TTCCTTCGGC CCGGTGCTCG GAGACCTCGA CCTGTATCTC TTCGGCGAAG GCCGGCATTG GGATCTCGCG CGCGTCCTCG GCGCGCAACC GCGAACGATC GAAGGCGTTG CGGGCGTTGC CTTCGCGGTA TGGGCGCCGA ATGCGCGGCG CGTATCCGTC ATTGGCGATT TCAACAATTG GGATGGACGG CGGCACCCGA TGCGGCTGCG CCATGGCGCG GGGATATGGG AGCTCTTCGT GCCGCGGCTC GGCCAGGGCA CACGCTACAA ATACGAAATC GCGGGTGCGG ACGGCAGCAC GACGCAAAGA GCCGACCCTG TCGCGCGCGC CACCGAGGCA CCGCCTGCGA CGGCATCGGT CGTCGCCGCG CCGCCGGACT ATCGCTGGAC GGATGAAGAC TGGCTCGCTG AACGCGCCTC CCGCCAGCGC CCGAATGCCG CGATCTCGAT CTACGAGGTA CATGCGGCCT CATGGGTACG GCCGGAGGGG AACGTGGAAG GTACGCTCGA CTGGAATGCG CTGATAGACA GGCTCATTCC CTATGTCGCC GACATGGGCT TCACGCATGT CGAGTTCCTG CCCATCATGG AGCATCCGTT CGGTGGCTCG TGGGGATACC AGACACTCTC GCAATTCGCG CCCTCCGCGC GCTTCGGGAA ACCGGAGGAT TTCGCGCGGT TCGTTGATGC ATGTCACCGC GCCGGCATCG GCGTCATCCT CGACTGGGTA CCGGCTCATT TTCCGACGGA CCCGCACGGC CTCGCCCATT TCGATGGAAC GCATCTCTAT GAACATGCGG ACCCGCGGGA GGGCTTTCAT CCCGACTGGA ATACGATGAT CTACAATCTC GGCCGGACGG AAGTTGCGGG CTTTCTTCTT GCGTCGGCGC TTTGGTGGAT CGAGACCTTT CATGTCGATG GGCTACGTGT CGACGCCGTT GCGTCGATGC TTTACCGGGA TTACAGCCGC AAGGCCGGCG AATGGGTGCC GAACATTCAT GGCGGGCGGG AAAATCTGGA ATCCGTCGAC TTCCTGAAGC GGCTCAATGC CATCATCGCG GAACGCTGCC CGGGCGCCGT CACCATCGCC GAGGAGTCGA CCGCATGGCC GGGCGTTTCG GCGCCGCTCA AAAGCGGAGG GCTCGGCTTT TCCTACAAGT GGAACATGGG CTGGATGCAC GACACGCTCC AATATGTGGA GCGCGATCCG CTCTATCGCA AATGGCATCA CTCCGAGATG ACCTTCGGGC TTGTCTATGC GTTCTCGGAG AAATTCGTTC TGCCGCTGAG CCATGACGAA GTGGTGCATG GGAAAGGCTC GCTGATCGGG AAGATGCCGG GCGACCGGTG GCGGAAATTC GCGACGCTAC GCGCCTACTA CACCTTCATG TGGACGCATC CCGGCAAGAA GCTCCTTTTC ATGGGGGGCG AGATCGCGCA GGACAGCGAG TGGAACCACG ATGCCGAAGT CGCGTGGCAC TTATTGTCGA TCCCCGAACA CGCCGCCGTG CAACGCCTCG TCCGCGACCT CAATCGGCTC TATGCGAGCG AACCGGCACT CCACGCACGC GACACGGAGC CTGCGGGCTT TCAATGGATC GTCGGCGCAG ACGCGGAGCG CAGCGTTTTC GTCTATGCGC GATATGGCGA GACCGGAACG CCGCCCATGG TGGTGCTCGT CAACATGACG CCGGAGCCAT GCACCGACTA CCGGATCGGC ATGCCGCTTG CCGGGCAGTG GCGCGAAATA TTGAACAGCG ACGCGGCCAT TTACGGCGGC GGCAACATCG GCAATGCCGG TCTGGTGGAA GCGCGCGCGG CGCCTGCCCA TGGCCAGCCT GCAAGCGCGA GCGTCGTGCT GCCGCCTCTG GCCGCCGTTA TTCTCCAGCA TGAGGGACCG AACCGATGA
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Protein sequence | MEGGDRLEYA AGALLEGRLT DPFALLGPHA QDDGYVVRTF QPGAESVSLI ARSGGEDIGT LEEISDGLFA GRMKEDKPYS LRILWPGGAV QEVEDAYSFG PVLGDLDLYL FGEGRHWDLA RVLGAQPRTI EGVAGVAFAV WAPNARRVSV IGDFNNWDGR RHPMRLRHGA GIWELFVPRL GQGTRYKYEI AGADGSTTQR ADPVARATEA PPATASVVAA PPDYRWTDED WLAERASRQR PNAAISIYEV HAASWVRPEG NVEGTLDWNA LIDRLIPYVA DMGFTHVEFL PIMEHPFGGS WGYQTLSQFA PSARFGKPED FARFVDACHR AGIGVILDWV PAHFPTDPHG LAHFDGTHLY EHADPREGFH PDWNTMIYNL GRTEVAGFLL ASALWWIETF HVDGLRVDAV ASMLYRDYSR KAGEWVPNIH GGRENLESVD FLKRLNAIIA ERCPGAVTIA EESTAWPGVS APLKSGGLGF SYKWNMGWMH DTLQYVERDP LYRKWHHSEM TFGLVYAFSE KFVLPLSHDE VVHGKGSLIG KMPGDRWRKF ATLRAYYTFM WTHPGKKLLF MGGEIAQDSE WNHDAEVAWH LLSIPEHAAV QRLVRDLNRL YASEPALHAR DTEPAGFQWI VGADAERSVF VYARYGETGT PPMVVLVNMT PEPCTDYRIG MPLAGQWREI LNSDAAIYGG GNIGNAGLVE ARAAPAHGQP ASASVVLPPL AAVILQHEGP NR
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