| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0541 |
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| Symbol | |
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| ID | 5454146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 584628 |
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| End bp | 587813 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640876109 |
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| Product | trehalose synthase |
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| Protein accession | YP_001411821 |
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| Protein GI | 154250997 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00661441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.174056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC AGGCGCTCGA GACCGATCCC CTCTGGTACA AGGACGCGGT GATCTACCAG
CTTCATGTGA AGTCGTTCTT CGATGCCAAT AATGACGGCA TCGGCGATTT CGCCGGGCTG
ATGCGTAAGC TCGACTACAT CGCCGATCTC GGCGTGACCG CGATCTGGCT GCTGCCTTTC
TACCCGAGCC CCCGCCGCGA CGACGGCTAC GACATCGGCG AGTACCGCGA TGTGAGCCCG
GACTACGGCA CCTTTGAAGA GATGCGCGCC TTTGTGCAGG CGGCGCATGG GCGGGGCATT
CGCGTCATCA CCGAGCTGGT CATCAACCAC ACATCGGACC AGCATCCCTG GTTTCAGGCG
GCGCGCCGCG CACCGCCGGG AAGCCCCGAG CGGGATTTCT ATGTCTGGTC GGACAGCGAC
AAGAATTACG CCGGCACGCG GATCATCTTC TGCGATACGG AGAAATCGAA CTGGACCTGG
GACGAGGAGG CTGGCGCCTA TTTCTGGCAT CGCTTCTATT CGCACCAGCC GGACCTGAAT
TTCGACAATC CTGCGGTGCT GAAGGAAGTC TTGTCCGTGA TGCATTTCTG GCTCGATGCG
GGCGTCGACG GGCTGCGGCT CGACGCCATC CCCTATCTGA TCGAGCGGGA GGGAACATCG
AACGAAAATC TGCCGGAGAC GCATGAAGTC CTTAAGAAGA TCCGCGCCGA CCTCGATCGA
CACTACAAGG ACCGCGTATT GCTGGCGGAA GCGAATATGT GGCCGGAAGA CACTCAGCAA
TATTTCGGCA CGGACGGCGA CGAATGCCAC ATGGCGTTTC ACTTTCCGCT TATGCCGCGC
ATGTACATGG CGGTGGCGCA GGAAGATCGC TTCCCGATCA CCGACATCAT GCGCCAGACC
CCCGACATAG ATGAAAGCTG CCAATGGGCG ATTTTCCTGC GCAATCATGA CGAGTTGACG
CTCGAAATGG TGACGGACGC GGAGCGCGAC TATCTCTGGA ACACCTATGC CGCGGACCGG
CGGGCGCGGA TCAATCTCGG CATTCGCCGC AGGCTGGCGC CGCTGATGGA GCGGGACAGG
CGCAGGATCG AGTTGATGAA TGCGCTGCTG CTGACCATGC CGGGCACGCC GGTGCTCTAC
TACGGCGATG AAATCGGCAT GGGCGACAAT GTCTATCTCG GCGACAGGGA TGGTGTGCGC
ACGCCGATGC AGTGGTCGCC CGACCGCAAT GGCGGCTTCT CGCTCGCGGA CCCGGCGACA
CTGGCGCTGC CCGCGATCAT GGACCCGCTT TACGGCTTTC AGGCCGTCAA TGTCGAGGCG
CAGGAACGGG ACCGGCACTC GCTGCTGAAC TGGCTGAAGC GGATGCTGGC GGTGCGGCGG
GAGCACCGCG CGTTCGGACG CGGTGCGCAA CGCTTTCTCA GGCCAGCGAA CCGGAAAGTG
CTCGCCTATC TGCGCGAGCA TGACGGAGAC ATCATTCTCT GCGTCGCCAA TCTCAGCCGG
ACCGCGCAGG CGGTGGAGCT GGACCTGCAT GAATATGAAA ACCGGACGCC CATGGAACTG
AGCGGCGGCG CGGCTTTTCC GGCCATCGGG CAGTTGCCTT ATCTCCTGAC GCTGCCGCCT
TACGGCTTTC TCTGGTTTCG CCTCGCGGAG GATGCGACCT CGCCCGAATG GGCGAGCGGG
GCGCCCGGCA TGGAGATCGA GAGATACACA TTCGTGCTGC GCCCCTCGCT GACGGATGTC
ACGCAGGGGA ACAACCGGCA TGTTCTCGAG AACGATGTGC TGCCCGCCTA TCTTCCCTAT
CGCCGCTGGT TTGGCGCCAA GGACGAGACG CTGCGCGGCG TTCGCGTTGC GAAAACGGCG
GCGCTGCCCG GCGCGGAGGA TTTGCTGTGG ACGGAACTCG AGGTGACGAC CGATAGCGGC
ACGAATTCAT ATGCATTGCC TCTCGGCATC GTCTGGGAGG GAGAGCAGGC GGGCCCCTTC
GCCTCCAACC TCGCCCTCGC GCGCGTGCGG CGCGGGCGGC ATGTGGGGCT GCTGACGGAT
GGCTTCTCGC TCGAGACCTT CTCGCAGACG GTGGTGAAGG CAATGCAAAG CGGGGCGGAA
CTGCCGCTCG ACGGAAGCGT GGTGAAGTTC ACCGCTCATC CGGGCTTCGA CATTGAACCC
GACCTCAAGC CGCATTGGCT GGCGGCGGAG CAATCGAACA GCACGATGGT GCTGGGCGAG
CGAGCGGTAC TGAAAGTTCT GCGCAAGATA CAGAAGGGCA TTCACCCTGA GGTCGAGATG
GTGCGCCATC TGACGGACAA GGGATTTGAA AATGTCCCGG CCATTCTCGC CGAAGCGAAT
CGTATTGATG ATGACGGCAC GAGCCTGCTG ATGCTGATGC AGACCTTCGT CTATAACCAG
GGCGACGGAT GGCAGTGGAC GCTGGGCGCG CTTGAGCGGA TGGCGACCGA CATGGATTGG
AGTTTCTCCA ACTACGCCAA TTTCGCAAGG AACCTTGGCC AGAGGCTTGC GGAGATGCAC
GCCGTGCTCG CGCAACCGGC AAAGCATCCG GCCTTTGCAC CCGAGACCAT GGATGCGGCG
GCCGCTTCCG AAATGGGCGA GCGCATCGCG AACGAGGTTT CTACCGCGCT CGACCTGACT
CCGCAGACCG GAACCGAGGA CGAAACGCTG CTCGGCCAGC GCGAGATATT GCTCATGCGC
ATCCGCGAGC TCGCCATTTC CGCTGAAGGG CGCGTGCGCA CAAGAATTCA TGGCGATCTG
CATCTGGGGC AGGTGCTCGT GACCGGCAGC GACGTGATGC TGATCGATTT CGAAGGCGAG
CCGGCAAAGC CGCTTGCCGA CCGGCGGAAG AAAGATATTC CACTGCGCGA TGTGGCCGGG
CTGCTCCGCT CGTTCGATTA TGCGGCGGCG GTTGCCGAGC GGCAGCGCCC CGCAAGCGCG
GAGACGGAGG AAATCCGGAC GGGTGAACGC TATGCGCGCT TCCGCGTTCA GGCGGTGGAG
GCGTTCCTGG ACGGATATGC CGGAGAGCGC GACATCGGCA ACGACCCCTT GCTCAATCTC
CTCGTTCTGG AGAAGGCGGC ATATGAGGTT GCCTACGAGG CGGCCAACCG GCCGGACTGG
ATCGACGTTC CCGTTGCGGG GTTTGCACGC GTGGCGGAAG CGATACTCAA CGGAAAGGGA
ATTTGA
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| Protein sequence | MTEQALETDP LWYKDAVIYQ LHVKSFFDAN NDGIGDFAGL MRKLDYIADL GVTAIWLLPF
YPSPRRDDGY DIGEYRDVSP DYGTFEEMRA FVQAAHGRGI RVITELVINH TSDQHPWFQA
ARRAPPGSPE RDFYVWSDSD KNYAGTRIIF CDTEKSNWTW DEEAGAYFWH RFYSHQPDLN
FDNPAVLKEV LSVMHFWLDA GVDGLRLDAI PYLIEREGTS NENLPETHEV LKKIRADLDR
HYKDRVLLAE ANMWPEDTQQ YFGTDGDECH MAFHFPLMPR MYMAVAQEDR FPITDIMRQT
PDIDESCQWA IFLRNHDELT LEMVTDAERD YLWNTYAADR RARINLGIRR RLAPLMERDR
RRIELMNALL LTMPGTPVLY YGDEIGMGDN VYLGDRDGVR TPMQWSPDRN GGFSLADPAT
LALPAIMDPL YGFQAVNVEA QERDRHSLLN WLKRMLAVRR EHRAFGRGAQ RFLRPANRKV
LAYLREHDGD IILCVANLSR TAQAVELDLH EYENRTPMEL SGGAAFPAIG QLPYLLTLPP
YGFLWFRLAE DATSPEWASG APGMEIERYT FVLRPSLTDV TQGNNRHVLE NDVLPAYLPY
RRWFGAKDET LRGVRVAKTA ALPGAEDLLW TELEVTTDSG TNSYALPLGI VWEGEQAGPF
ASNLALARVR RGRHVGLLTD GFSLETFSQT VVKAMQSGAE LPLDGSVVKF TAHPGFDIEP
DLKPHWLAAE QSNSTMVLGE RAVLKVLRKI QKGIHPEVEM VRHLTDKGFE NVPAILAEAN
RIDDDGTSLL MLMQTFVYNQ GDGWQWTLGA LERMATDMDW SFSNYANFAR NLGQRLAEMH
AVLAQPAKHP AFAPETMDAA AASEMGERIA NEVSTALDLT PQTGTEDETL LGQREILLMR
IRELAISAEG RVRTRIHGDL HLGQVLVTGS DVMLIDFEGE PAKPLADRRK KDIPLRDVAG
LLRSFDYAAA VAERQRPASA ETEEIRTGER YARFRVQAVE AFLDGYAGER DIGNDPLLNL
LVLEKAAYEV AYEAANRPDW IDVPVAGFAR VAEAILNGKG I
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