| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0533 |
|---|
| Symbol | |
|---|
| ID | 5453590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 574352 |
|---|
| End bp | 574978 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640876101 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001411813 |
|---|
| Protein GI | 154250989 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.0518509 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGG CAGCCCGCAA CGGCGCACCG AGCAGGCGCG AGAAACGGCG CCAGGCCATT
CTCGATGCCG CGCGCGCGAT TTTTCTCGAA CAGGGATATG GAGCGACAAG TCTCAACGAC
ATCGTCAGTG TCTCGGGCGG CTCGCTCGCC ACGCTCTACG ATCTCTTCGG CGGCAAGGCC
GGCCTTTTTC AGGAAATGAT CGAACAGGAG TGCGAGAATT TTTTCGGTGC GCTCCGCGCG
GAAGACCTGG ACGAACAACC GCTCCGCGAG GCGCTGCGCG TGGTCGCCAG GCAGTTCTTC
GACGGCGTGA TCCAGCAACC CAAGATGTCG CTGCTCCGCC TCGTTGTCGC CGAGGCGGCG
CATTTCCCCG AACTCGGCTC CACCTTCTAC AGCGCCGGAC CGGCAAGGGG CCGCGAAATG
GTCTCGACCT ATCTCGCGAA GCAATCGCGG CGCGGCCTGC TCCAGGTCGA CGATCCGATG
CGCGCAGCCG ACGTCTTCAT CGGACTCGTG CTCGGCGAGT ACCAGATGAA AGTGCTTTGC
GGCGAAGACG TTAAACTCTC ATCGGAAGAG ATCGACCGAT ATCTCGACTA CGCGCTCGAT
GTCTTCCTGA GGGTTTACGG CCCCTGA
|
|---|
| Protein sequence | MTKAARNGAP SRREKRRQAI LDAARAIFLE QGYGATSLND IVSVSGGSLA TLYDLFGGKA
GLFQEMIEQE CENFFGALRA EDLDEQPLRE ALRVVARQFF DGVIQQPKMS LLRLVVAEAA
HFPELGSTFY SAGPARGREM VSTYLAKQSR RGLLQVDDPM RAADVFIGLV LGEYQMKVLC
GEDVKLSSEE IDRYLDYALD VFLRVYGP
|
|---|
| |