| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0532 |
|---|
| Symbol | |
|---|
| ID | 5454429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 572880 |
|---|
| End bp | 574307 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640876100 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001411812 |
|---|
| Protein GI | 154250988 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.17075 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGT TCTCCCCCGC GCTCGCTTTG TCTTTTCTCT TTCTCGGCGC CTGCACGCTG
GCGCCGGACT ATGTGCGTCC GGCCGCGCCG ATACCGTCCG GCTGGCCGAC CGGTGCCGCT
TATGAGGATG CCGCCGCGAA GGACGGCGTC GAGGTCGCCG ATCTGGGCTG GCAGGATTTC
TTTCTGTCGG ACGAAATGCG AAACCTGATC GCGCAGGCGC TGGCGAACAA TCGCGACATG
CGCGAGGCGG TACTCAATGT CGAACAGGCG CGCGCGCTAT ATCGCGTGCA GCGCGCCGAT
TTGCTGCCGA GCATCAGCGG CGACGGTACG ATGACGCGTG AGCGCGTGCC GGGCGACATC
TCGGGAACCG GGCAGGCGCA AACCGGCACG AGCTATCGCG TGCAGGCGAA TATCGCCTCT
TACGAACTCG ACCTATTCGG CCGCGTGCGC AGCCTCAACG AGCAGGCCTT GCAGGAATAT
TTTGCGACGG ATGAAGCGCG CCGCGCCGCG CAGATTGCCT TGATCGCGGA AGTCGCGAAT
GCCTATCTGA CGCTCAGGGC GGATCAGCGG CTTCTCGCGC TTACCGAGGA AACGCTGCAG
ACGCAGGAGA AGTCCCTCGA ACTGGTGCAG ATGACCTTCG ACCGGGGCAT TTCCTCGAAG
CTCGACCTCG TGCAATCGCA AACGGCGGTC GAGACCGCGC GCGTCAACCG ATACGCCTTC
ATCCGGCAGG TGGCGCTCGA CCGCAATGCC CTGACGCTGC TGGTTGGTGC GCCGATCGAC
GACGACGCGC TCGACCGGGC GGAAAACATC GACAGCTTCG TCGCCGACCT GCCGGCGGGA
CTTCCCTCGG ATCTCCTGCG CAATCGACCC GACATACGGC AGGCAGAGCA TGTTCTTCAG
GGCGCCAACG CCAATATCGG CGCGGCCAGG GCGGCCTTTT TCCCGAGCAT CACGCTCACG
GCGGCGGGCG GTACGGCGAG CGGTTCGCTC TCCGGTCTCT TCGAGCCCGG CTCGGGGGCA
TGGAGCTTCA TGCCGCAGAT CAGTCTGCCG ATCTTCCAAG GCGGCCGGAA CCTCGCCAAT
CTGGAAGTCG CCGAAATCCA GAAGGACATC AACATCGCGC GCTACGAGGG AACGATCCAG
ACCGCCTTCC GCGAGGTAGC CGACGCTCTG GCGGGGCGCG GCACCTATGA CGCCCAGGTG
GCGGCGCAGC AGGCGCTCGT CGACGCCACG GATGAAAGCT ATGCGCTCGC CGAACGCCGC
TACCGGAGCG GTATCGATAG TTTTCTCACT TTGCTCGACG CCCAGAGATC CCTTTACGCA
GCGGAACAGG AGCTTATTCG CACCCGGCTT GCGCGGGTGA GCAATACCGT CAATCTGTAC
AAGGTTCTCG GCGGGGGCGG ATTAGCGGAG GCCGCCGATG AGAAGTAG
|
|---|
| Protein sequence | MNRFSPALAL SFLFLGACTL APDYVRPAAP IPSGWPTGAA YEDAAAKDGV EVADLGWQDF
FLSDEMRNLI AQALANNRDM REAVLNVEQA RALYRVQRAD LLPSISGDGT MTRERVPGDI
SGTGQAQTGT SYRVQANIAS YELDLFGRVR SLNEQALQEY FATDEARRAA QIALIAEVAN
AYLTLRADQR LLALTEETLQ TQEKSLELVQ MTFDRGISSK LDLVQSQTAV ETARVNRYAF
IRQVALDRNA LTLLVGAPID DDALDRAENI DSFVADLPAG LPSDLLRNRP DIRQAEHVLQ
GANANIGAAR AAFFPSITLT AAGGTASGSL SGLFEPGSGA WSFMPQISLP IFQGGRNLAN
LEVAEIQKDI NIARYEGTIQ TAFREVADAL AGRGTYDAQV AAQQALVDAT DESYALAERR
YRSGIDSFLT LLDAQRSLYA AEQELIRTRL ARVSNTVNLY KVLGGGGLAE AADEK
|
|---|
| |