Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0531 |
Symbol | |
ID | 5456447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 569749 |
End bp | 572883 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640876099 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001411811 |
Protein GI | 154250987 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.0606405 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAATT TCTTTATCGA CCGTCCCGTC TTTGCCTGGG TCGTTGCCAT CGCCATCATG CTGGCGGGCA CGCTTTCGAT CATGCAGTTG CCGATCGAGC AGTATCCGCC GATTGCACCG GCCTCCGTGA CCGTTACCGG CACCTATCCG GGCGCATCCG CGCGGACGGT CGAAAACACG GTGACGCAGG TCATCGAACA GAAAATGAAC GGCATCGACT ACCTGCGTTA CATGTCGTCG ACCAGCGACT CTTCGGGCAC CGGCACGGTA ACGCTTACAT TCGAACCTGA AGCCGATCCG GATATTGCCC AGGTGCAAGT GCAGAACAAG CTGCAATCGG CTCTGCCTCT CCTGCCGCAG GAAGTGCAGC AGCAGGGTGT GACGGTTGCG AAATCGGCCA GAAACTTCCT GATGGTGATC GCGTTCATTT CGACGGATGG CCGGATCAAT GAAACCGAGA TCGCCGACTA CGTCGCATCG CACATTCAGG ATCCGATAAG CCGCGTGAAC GGCGTAGGCG AGATTCAGCT TTTCGGGCCG CAGCACGCCA TGCGTATCTG GATCGATCCG CAAAAACTGC AAAGCTACCG AATATCGATA TCGGATATCA CCACGGCGAT CAGGGCGCAG AATGCAGAAG TGTCGGCAGG ACAGCTCGGT GCCCGCCCCG CGGTGGAAGG CCAGCAGCTG AACGCCACAG TGACGGCGCA AACGCGCCTC GAAACGCCGG CCCAGTTCGA AAACATCCTG CTCCGGGTCA ATGAGGATGG ATCGCAGGTG CGCCTCAAGG AGGTGGCCCG CGTCGAACTC GGCTCCGAAA ACTATCAGAC CATCGGACGC TATAATGGCA ATCCGGCCTC CGGTATTGCC GTCCGGCTGG CATCGGGCGC GAACGCGCTC GACACGGCGG AGGCCGTTCG CACGAAAATT GCCGAACTCG AACCCTTCTT CCCCGAGGGG TTGGAGGTCG TCATACCGTA TGACACGACG CCCTTCGTCC GTCTCTCGAT CAACGAAGTG ATCAAGACGC TCGCGGAAGC GATCGTTCTT GTCATTCTCG TAATGTATCT GTTCCTTCAG AACATCCGGG CGACATTCAT TCCCGCCATC GCCGTCCCCG TCGTTCTTCT GGGCACGTTC GGCATTCTCG CGGCGTTCGG TTTCACGATC AACACGCTCA CGATGTTCGG CATGGTGCTG GCGATCGGTC TTCTCGTGGA TGACGCGATC GTCGTGGTCG AAAACGTCGA GCGTGTTATG AGCGAGGAAG GGCTGTCGCC GCGGGAAGCG ACGCGGAAAT CGATGGGCCA GATCACCGGG GCGCTTGTCG GCATCGGCCT TGTGCTGAGC GCCGTTCTCA TTCCGATGGC TTTTTTTGCC GGGTCTACCG GTGCGATCTA CCGTCAATTC TCGCTGACGA TCGTATCGGC GATGGTGCTG TCCGTGATTG TCGCGCTGGT TCTGACGCCG GCGCTCTGCG CCACGCTCCT GAAGCCGGTT AAGAACCACG GCGAGGAAAA ACGCGGTTTC TTCGGCTGGT TCAATCGCAT GTTCGACCGG AGCGGACGCT CATACGACGT GGGTGTGCGC CGCTTTCTGG CGGGGCCGGT GCGTTACATG GTCGTCTACG GAGTCATCGT CGTCATCCTC GGCGCGCTCT TTCTGCGGCT CCCGACCTCG TTCCTGCCGG ACGAGGATCA GGGTTTCATG ATGACTCTGG TTACGACACC GGCAGGCGCG TCCGCCGAGC GCACGCTTGA ATCCATGAAG CTCGTAGAAA ATTATTTTTT GGAGCAGGAA AAGGATTCCG CGCAGGGCCT GTTTTCGGTC GTGGGATTCA ACTTCGCCGG CGCGGGCCAG AATTCAGCGA TGGCCTTCAT CAACCTGAAG CCTTTCGACG AACGCGGAAC GGACGAGACA AGTGCCTTCA GCGTTGCGCA GCGAGCCATG GGCTTCTTCG GCGCCATGAA GGACGCGATG GCCTTCGCCA TCATTCCGCC GTCGATCACG GAACTCGGTA CGGCTTCGGG TTTCGACATG CAACTCGTCG ACCGGGCAGG GATCGGTCAC GAGAAGCTTA TGCAGGCGCG CAACCAACTT CTCGGACTTG CCGCGCAAAG TTCAAAGCTC GTCGGCGTGC GGCCGAACGG ACTGGACGAT ATGCCGGAGT TCCGCGTCGA TGTGGACCAG GAGAAAGCTG CGGCGCTCGG CCTCGCGCTT TCCGACATCA ACAACACATT GTCCGCTGCC TGGGGATCGA GCTACGTCAA CGATTTCATC GACGAGGGGC GCGTCAAGAA AGTCTACGTC CAGGCCGACG CGCCTTTCCG GATGCTGCCG GAGGACATCT ACAAGCTTCA TGTGCGCAAT GCGAACGGCG AAATGGTGCC TTTCTCCGCC TTCGCGGAAA CGCACTGGAC ATATGGATCG CCACGGCTCG AGCGATTCAA CGGCTCCTCC TCGCGTCAGA TCCAGGGTTC GGCCGCGCCC GGCGTAAGCT CCGGCGATGC AATGGCCGAG ATGGAAAGGC TGATGGCGCA ATTGCCCGAA GGCGTCGGCT ATGAATGGAC CGGGTTGTCC TACGAGGAGC GGCAGGCGGG CGCGCAGGCC CCTTCTCTCT ATGCGCTTTC GCTACTGTTC GTTTTTCTCT GTCTTGCCGC GCTCTATGAA AGCTGGTCGA TCCCGGTTTC GGTGATGCTC GTCGTTCCCC TGGGCGTTCT CGGTGCCGTG CTTGCGGCCA CCATGACCGG TCTTTCGAAC GACGTTTATT TCCAGGTCGG CCTGCTCGTC ACGATCGGCC TTGCCGCGAA GAACGCAATC CTGATCGTCG AATTTGCGAA GTCGCTCTAC GAGCGCGGTG AGAGCCTTGC CGACGCTACG ATTCAGGCGG CGCGGCTGCG CCTTCGGCCG ATCATCATGA CCTCGCTTGC CTTCACGCTC GGTGTGCTGC CGTTGGCGAT TGCTTCGGGC CCCGGCTCGG GCAGCCAGAA CGCGATCGGC ATCGGCGTCA TGGGCGGCAT GATCTCCGCG ACGGTTCTTG CCATCTTCTT CGTGCCGCTC TTCTTCGTCG TGGTGGAGCG TATCTTCCCG AAGCGGGTGG CGACGACTGC GCCGGAAACG GAAACAGACC GATGA
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Protein sequence | MANFFIDRPV FAWVVAIAIM LAGTLSIMQL PIEQYPPIAP ASVTVTGTYP GASARTVENT VTQVIEQKMN GIDYLRYMSS TSDSSGTGTV TLTFEPEADP DIAQVQVQNK LQSALPLLPQ EVQQQGVTVA KSARNFLMVI AFISTDGRIN ETEIADYVAS HIQDPISRVN GVGEIQLFGP QHAMRIWIDP QKLQSYRISI SDITTAIRAQ NAEVSAGQLG ARPAVEGQQL NATVTAQTRL ETPAQFENIL LRVNEDGSQV RLKEVARVEL GSENYQTIGR YNGNPASGIA VRLASGANAL DTAEAVRTKI AELEPFFPEG LEVVIPYDTT PFVRLSINEV IKTLAEAIVL VILVMYLFLQ NIRATFIPAI AVPVVLLGTF GILAAFGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVM SEEGLSPREA TRKSMGQITG ALVGIGLVLS AVLIPMAFFA GSTGAIYRQF SLTIVSAMVL SVIVALVLTP ALCATLLKPV KNHGEEKRGF FGWFNRMFDR SGRSYDVGVR RFLAGPVRYM VVYGVIVVIL GALFLRLPTS FLPDEDQGFM MTLVTTPAGA SAERTLESMK LVENYFLEQE KDSAQGLFSV VGFNFAGAGQ NSAMAFINLK PFDERGTDET SAFSVAQRAM GFFGAMKDAM AFAIIPPSIT ELGTASGFDM QLVDRAGIGH EKLMQARNQL LGLAAQSSKL VGVRPNGLDD MPEFRVDVDQ EKAAALGLAL SDINNTLSAA WGSSYVNDFI DEGRVKKVYV QADAPFRMLP EDIYKLHVRN ANGEMVPFSA FAETHWTYGS PRLERFNGSS SRQIQGSAAP GVSSGDAMAE MERLMAQLPE GVGYEWTGLS YEERQAGAQA PSLYALSLLF VFLCLAALYE SWSIPVSVML VVPLGVLGAV LAATMTGLSN DVYFQVGLLV TIGLAAKNAI LIVEFAKSLY ERGESLADAT IQAARLRLRP IIMTSLAFTL GVLPLAIASG PGSGSQNAIG IGVMGGMISA TVLAIFFVPL FFVVVERIFP KRVATTAPET ETDR
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