| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0468 |
|---|
| Symbol | |
|---|
| ID | 5454242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 510636 |
|---|
| End bp | 511709 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640876034 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001411748 |
|---|
| Protein GI | 154250924 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 83 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCGA AGCAGAAAAA AACGCCACCC CCCGCCGCCC CGCGCTGCGT GATGATGGTG
ATCTATGACG GCGCTCAGGT GCTGGACGTG GCAGGCCCCG TGCAGCTCCT CTCGGCGGCG
ACATTTCCGG ATGGCCGCGC CGCCTATGAA ATCGAGCTGG TGGCGGAAAA GCCCGGCCCT
GTCGCCACGA CCAGCGGCCT CCTGCTCATG GCGGCGCGCG GCTTCGCGGA TATCCCGCCC
GCCGCCCTCC GCAAGATCGA CACGTTGATG GTGACCGGCG GTCTCGGCTC GCGCGTGGAA
ATGGAGAACC GGCATCTTCT CGCCTTCGTT CGCGCCGCCG CCGCGCCCGC GCGCCGTGTC
GTGTCGATAT GCACCGGCGC GGTCATCCTC GCTGCCGCTG GCTTGCTCGA CGGACGCCGC
GCCACCACCC ACTGGGCATA TGCGCCCACC ATGCGCCGGC GCTTTCCGAA GGTTGCGGTC
GAAGAAGATG CAATCTATGT GCGCGACGGA AAATTCTGGA CAAGCGCCGG CGTCACGGCA
GGCATGGATC TCGCGCTGGC GCTGGTGGAG GAAGATCTCG GCCGCGAAAT GGCGCTCGCC
CTTGCGCGCC ATCATGTAAT GTATCTGATG CGCCCCGGCG GCCAGTCGCA ATTCTCCGCC
CAGCTCGCCG CCCAGCATGT CGAAGATGAG AGACTTGCCC GCGTCTGCGC CTTTGTCATC
GAAAATCCCC GCGCCGATCT CACCGTGCCT GCGCTCGCGG CGCGCGCCGT CATGAGCGAG
CGCAGCTTCG CGCGCCACTT CGTCGCCGAG ACGGGCTTCA CGCCCGCGCA ATTCGTGGAG
CGCGCGCGTC TCGACGAAGC CTGTCGCCGC CTTGCCAATG GCGATCACTC CCTCGACGCC
GTCTCCGCCG ATGCGGGCTT CGGCGCCGCC GAGCGCATGC GCCGCGCCTT CATTCGCCAT
CTCGGCGTCA CACCCGGCCG TTACCGCGAA CGCTTCCGCA CCGCGCGGCG CGATGCTCCC
CGTACCTTCT CACCGCTGGA AACAGGCAAT GCGCATCTCC ATTCTTCTCT TTGA
|
|---|
| Protein sequence | MSAKQKKTPP PAAPRCVMMV IYDGAQVLDV AGPVQLLSAA TFPDGRAAYE IELVAEKPGP
VATTSGLLLM AARGFADIPP AALRKIDTLM VTGGLGSRVE MENRHLLAFV RAAAAPARRV
VSICTGAVIL AAAGLLDGRR ATTHWAYAPT MRRRFPKVAV EEDAIYVRDG KFWTSAGVTA
GMDLALALVE EDLGREMALA LARHHVMYLM RPGGQSQFSA QLAAQHVEDE RLARVCAFVI
ENPRADLTVP ALAARAVMSE RSFARHFVAE TGFTPAQFVE RARLDEACRR LANGDHSLDA
VSADAGFGAA ERMRRAFIRH LGVTPGRYRE RFRTARRDAP RTFSPLETGN AHLHSSL
|
|---|
| |