| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0421 |
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| Symbol | |
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| ID | 5454269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 452686 |
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| End bp | 454671 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640875987 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001411701 |
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| Protein GI | 154250877 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.45567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAG AAAAACCGGG CGCGGAAAAA TCCCGTCTCT TTCAGGCAAA CGCGCCGGTC
TTTTTCGGGT CCGTCATCCT CGTTCTGGCG GCGCTTGTCT TCTCCGTCCG CGATCCGGCG
AATGCCGCCA ACATTTTCGC TTCGGTTCAG TCATGGATCA TCCATGAGAT GGGCTGGTTC
TATGTCGCCT CCGTCGCGAC ATTCCTGATT TTCTCCGTCG GCGTCGCCGC GAGTTCCATG
GGTGCGATCA AGCTCGGCCC GGATGACTCC GAACCCGATT TCTCGACGGC GTCCTGGTTC
GCCATGTTGT TCAGCGCCGG CATGGGCATC GGGATCATGT TCTACGGCGT CGCGGAGCCG
GTGCTGCATT TCGCCAGCCC GCCGGTGGGC GAGGGGGAGA CGCTGGACGC CGCGCGCAAT
GCAATGCAAC TCGCCTTCTT TCACTGGGGG CTTCACGCCT GGGCGATCTA TGCCGTGATG
GGTATGGCGC TCGCCTATTT TTCCTTCCGT CACGGACTGC CGCTCACGGT GCGCTCGGCG
CTCTATCCGC TGATCGGCGA GCGTATCCAC GGCTGGATAG GGCACCTCGT CGACATCTTC
GCCGTCTTCG GCACGATGTT CGGCGTCGCT ACCTCGCTCG GCCTTGGCGT GATGCAGGTA
AATGCCGGCC TCAACTACCT GTTCGACATC GAGATGGCGC TCGGCGTTCA GCTCGCCCTG
ATCGCAGGCA TAACGCTTCT GGCGACCGCC TCCGTCGCTT CCGGTATCAA TGCGGGCATT
CGCCGCCTCT CTGAGCTCAA TCTCGGCCTG GCGCTGCTGC TCATGCTTTT CGTGCTGTTT
GTGGGGCCGA CTGTCTTCCT GCTGCAGGCG GCCATGCAGA ATACAGGCGG CTATTTGAGC
GACATCATCG GCAAGACATT CACGCTCTAC GCCTATCAGC CGAATGAATG GATCGGAAAC
TGGACCCTCT TTTACTGGGG ATGGTGGATT TCATGGTCTC CCTTCGTCGG CATGTTCATC
GCGCGCATTT CGCGCGGCCG CACAATCCGC CAATTTGTTG TGGGCGTGCT CCTCGTGCCG
TCCGGCTTCA CCTTCCTCTG GTTCACCGTG TTCGGGAATA CGGCGCTCGC TATGCAGCTT
GATGGTTCGG CCGAGATGGT CGGCGCCGTC CAGGCCGATG TCGCGGTCGC GCTTTTTCAG
TTCCTCGAGC ACCTTCCCCT TGCCGGTATC TCGATGTCGC TCGCAACGTT GCTTGTCGTG
ACCTTCTTCG TCACATCGTC GGATTCCGGG AGCCTCGTCA TCGACATCAT CACCTCGGGC
GGTAAAGCGG AGCCTCCGGT CTGGCAGCGC GTATTCTGGG CCTTGATGGA GGGCGTGGTT
GCGGCCGTGC TGCTGCTGGC GGGCGGTCTG GCCGCGTTGC AGACAGGCGC CATCGCCAGT
GGCTTTCCGT TGGCCGCCAT TCTGCTCATC GTCTGCTACG GCCTCTTCAC CGCTCTCCGC
CGGGAGACGC AACGCCAGAA GAGCCTTCAA TTCGGCATTC CGATTGTCGC GAGCCATCCG
CCCCTCGCCT GGAAACAGCG TCTCGGGACG CTTCTTCATC AGCCGACGCG CGAGCGGGCA
TCGGCTTTCA TGCGCGATGT CGTGGGCCCC GCGCTCAATG AGGTCGCGGT GGAAATTCGT
CATCGCGGTC TTGAGGTGGA TGTCACCGCA ACCGAGAGGA AGACACAACT GTCGGTCGGG
CATGGCGCCA GCGACGATTT CCTCTATGGC GTCGCGCTTC GGAGCGTACC GGTCCCAAGC
TTTGCCATCA CTGCGCTTGA AGGTGAGCGC GAAGGGCCGG ATCACACCTG GCGCGCGGAA
GTCGCCCTGC GTGAGGGCGG TCAACGCTAC GATATTTTGG GTTACACCAA GGAACAGGTG
ATCGCGGACC TTCTGGGGCA GTATGAGCGG CACATGCATT ATCTGAATCT GCACCGGGCC
GGATAG
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| Protein sequence | MAEEKPGAEK SRLFQANAPV FFGSVILVLA ALVFSVRDPA NAANIFASVQ SWIIHEMGWF
YVASVATFLI FSVGVAASSM GAIKLGPDDS EPDFSTASWF AMLFSAGMGI GIMFYGVAEP
VLHFASPPVG EGETLDAARN AMQLAFFHWG LHAWAIYAVM GMALAYFSFR HGLPLTVRSA
LYPLIGERIH GWIGHLVDIF AVFGTMFGVA TSLGLGVMQV NAGLNYLFDI EMALGVQLAL
IAGITLLATA SVASGINAGI RRLSELNLGL ALLLMLFVLF VGPTVFLLQA AMQNTGGYLS
DIIGKTFTLY AYQPNEWIGN WTLFYWGWWI SWSPFVGMFI ARISRGRTIR QFVVGVLLVP
SGFTFLWFTV FGNTALAMQL DGSAEMVGAV QADVAVALFQ FLEHLPLAGI SMSLATLLVV
TFFVTSSDSG SLVIDIITSG GKAEPPVWQR VFWALMEGVV AAVLLLAGGL AALQTGAIAS
GFPLAAILLI VCYGLFTALR RETQRQKSLQ FGIPIVASHP PLAWKQRLGT LLHQPTRERA
SAFMRDVVGP ALNEVAVEIR HRGLEVDVTA TERKTQLSVG HGASDDFLYG VALRSVPVPS
FAITALEGER EGPDHTWRAE VALREGGQRY DILGYTKEQV IADLLGQYER HMHYLNLHRA
G
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