| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0137 |
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| Symbol | |
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| ID | 5455859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 149401 |
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| End bp | 152406 |
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| Gene Length | 3006 bp |
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| Protein Length | 1001 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640875697 |
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| Product | double-strand break repair protein AddB |
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| Protein accession | YP_001411417 |
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| Protein GI | 154250593 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCCG ATTCCCTGAA CCTCTTCACC ATGCCGCCCG GTACGCCGTT TCTCGAACGG
CTGGCCGCGA CGCTGCTTGA CGATCCCTCA CTCGGTGGCC GGTTCAAAGG CAGTCCCGAG
CTCGCCGAAA TCACGATCCT GCTGCCCACG CGGCGTTCCG TCCGCGCGCT CGGCGAAGCC
TTTCTGCGCG CCGGCGCTGG CGCCCCTCTC CTTCTTCCGT CGATACGCAC GCTTGGCGAC
GTCGATGAGG AAGATCTCAT TCTGGATCCG CGAGGTCTCG GACGCGAAGC ACTCGAACTG
CCGCCGGCAA TGCCGGCGCT CGAGCGTCAG TTACGTCTCG CGCGCATGAT TGTTGAGGGC
CAGGGCGGCG ACGAAACCCG CGCGCTCGCG CTCGCCGCCG ATCTCGGACA TTTCCTCGAT
ATGGTTCTGA CCGAAGGCGC CGACCTCACA CGCCTCGCGG ATCTCGTGCC GCAGGACTTC
GCGGATCATT GGCAGATAAC CATCGACTTC CTGAAAGTGC TGACGGCCCG CTGGCCGGAG
GAGCTGGCGC GCCTCGGCCA TATGGAACAG GCGGAACGGC GCAATCTCCT GCTGCGTGCG
CAGGCGGAAG CCTGGACAGC CGCGCCGCCG CCGGGCCCTG TTATCGCAGC GGGCTCGACC
GGTTCGATCC CCGCCACGGC GGCTCTTCTC GGCGTCGTCG CCCATCTGCC GATGGGTGCT
GTCGTCCTCC CCGCGCTCGA TCTCGATCTT GATGAAGAGA GCTGGAACAT CATCGGCAAG
CCGGGAACCG CCTCCCATCC GCAATACGGA ATGAAAAAAC TTCTCGCTCA TCTTCGTGCT
ACTCGCGCCG ATGTCGGCAT ATGGCCAGGC GCCGAACGAT CGGCGGCGCT CCGTTCACGA
GGCCGCCTGC TTTCGGAAGC GTTGCGGCCG GCCGAAACCA CGGAGCGATG GCTCGGTCGT
CTCGGCGCCT TGGACGGGGA TGTGAAGGAC GGCTTGAAGG GCCTCGCGTT GATCGAAGCG
CCGAGCGAGC GCGATGAAGC TGGCGCCGTC GCGCTTCTGA TGCGCGATGT TCTCGAAAGG
CCGGGCAAGA CCGCTGCTCT CGTTACGCCA GACCGGAAGC TTGCCCGCCG CGTTGCCATG
GAGCTTCGCC GCTGGAAAAT CGACGTCAAC GATTCCGGAG GCGAACCGCT CGCAAAGACG
GCGCCGGTCG CCTTTCTCCG GCTCGTCGCA AACATGGTGA CGGAAGATCT GGCGCCGGTT
CCGTTGCTCG CATGCTTGAA GCATCCTCTC GCTGCGGCAG GCGAAGAGCC GGCGAAGTTC
AGGGCGCGCG TCCGGCGGCT GGAAATGCAT CTGCTTCGAG GTCCGCGTCC TGCTCCCGGT
CTCGACGGCC TCCGCGCGGC CTGCCGCGCA CTGGAAGACA AGCCAGGCGA CAGCGGCGAA
ATTTCCATCT TGCTTGACAA GATTGAGCGC AGCATCGCGC CCTTGCTCAA CGCGGCAACG
AAGAAAGGTA CAGCAACTTC CATTGTCGAG GCGCATGTGG AAGCCGCTGA ACGGCTCGCC
GCGAGCGCCA CTGAAACGGG GGCAGAGCGT CTCTGGAAAG GGGAGGCCGG TGAGGCGGCG
GCGGATTTCA TCAGGGAATT GATGGAAGCC ACACCCGCCT TCGGTGACAT CGACCCGCGC
TTCTACCCGC ACTTCTTCGA TGTGCTGTTG AGCGGTCGCG TTCTTCGCCC GCGATGGGGC
AGGCATTCCC GGCTCTTCAT ATGGGGCCCG CTCGAGGCGC GTCTGCAGCA TGCGGACCGC
ATGATCCTCG GCGGGCTCAA CGAAGGCACC TGGCCTGCAG AAGCGAATAT TGATCCCTGG
CTGAACCGGC CCATGCGGGC CACAATGGGG CTCGAACCGC CTGAACGCCG CATCGGGCTC
GCCGCGCATG ATTTTGCGGA AGGAGCGTCA GCCGGCGAAG CGTTCCTGAC GCGAGCTTTG
AAAGTCGAGG GCGCACCGAC GGTTGCCTCT CGCTGGTGGC TTCGCCTCGC AAGTCTCCTG
CAGGGACTGG AACAAGAAGA AGCGGTTTCT GCGCCCCAGT GGTGGCAATG GGCACACAAG
CTGGATGAAC CGGCCAAGGT GCTCACGCCG CTCCGTCCCC GTCCGGTGCC GCCACTCGAA
GCGCGGCCTC AAAGATTTTC GGTCACAGAG ATAGAAACGC TGATCCGCGA TCCCTACGCG
ATCTATGCGA GGAAAATTCT GGGGCTAAAG GTGCTGGACC CTCTCGACGC GGATATTGCC
GCTGCTGAGC GCGGCACGAT CATCCACGAA GCGCTGGAGA AATTCGTCGA AGCCTATCCC
AGGGACCTGC CGGAAAACGC CCTGCAAGAA CTGATCAATG TCGGCGAAGA GGCGTTCCGG
CAAGCGATCG GCCGTCCCGG CGTCGCAGCT TTCTGGTGGC CGCGCTTCCT GCGGATTGCA
AAATGGATTG TGGACTATGA GCAAGAGGAA CGCGCCGGCC TGCGCCACAT ACATGCAGAG
ACGCGCGGTG AAATACTGAT CGCCGAACTT GCCCAGCCCG TTGTCCTGAG CGGCAAGGCC
GACAGGATCG ACGAACGCGA AGACGGCATG GTCAATATTG TGGATTACAA AACGGGCACC
GTTCCGAGCA TAAAGCAGGT CGAGATCGGT TTGACGCCGC AGCTTCCCCT TGAGGCGGCG
ATGATGGCGA GAGGCGGTTT CCGGACAAAG GACGGCGCGC CTATCCCGCC GGCGAAAGCG
GCAAGTCTGA TATATCTGCG GCTCACAGGC GGCGAAACGG CGGGCGAAGT TCGCGCGATT
CCGGATGAGG GCGCGGATCT CGCGGACAAT ACCTATGCAT GGCTCGTCGA TCTGTTGCGC
CAGTACGAGG CGGAGACGAC GCCCTATCTC TCCCGCCCGC GGCCGATGTT CTGGGGACGC
TATGGCGATT ACGACCATCT GGCGCGTGTG AAGGAGTGGT CGGCGGCGGG GGGAGACGGC
GAATGA
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| Protein sequence | MRADSLNLFT MPPGTPFLER LAATLLDDPS LGGRFKGSPE LAEITILLPT RRSVRALGEA
FLRAGAGAPL LLPSIRTLGD VDEEDLILDP RGLGREALEL PPAMPALERQ LRLARMIVEG
QGGDETRALA LAADLGHFLD MVLTEGADLT RLADLVPQDF ADHWQITIDF LKVLTARWPE
ELARLGHMEQ AERRNLLLRA QAEAWTAAPP PGPVIAAGST GSIPATAALL GVVAHLPMGA
VVLPALDLDL DEESWNIIGK PGTASHPQYG MKKLLAHLRA TRADVGIWPG AERSAALRSR
GRLLSEALRP AETTERWLGR LGALDGDVKD GLKGLALIEA PSERDEAGAV ALLMRDVLER
PGKTAALVTP DRKLARRVAM ELRRWKIDVN DSGGEPLAKT APVAFLRLVA NMVTEDLAPV
PLLACLKHPL AAAGEEPAKF RARVRRLEMH LLRGPRPAPG LDGLRAACRA LEDKPGDSGE
ISILLDKIER SIAPLLNAAT KKGTATSIVE AHVEAAERLA ASATETGAER LWKGEAGEAA
ADFIRELMEA TPAFGDIDPR FYPHFFDVLL SGRVLRPRWG RHSRLFIWGP LEARLQHADR
MILGGLNEGT WPAEANIDPW LNRPMRATMG LEPPERRIGL AAHDFAEGAS AGEAFLTRAL
KVEGAPTVAS RWWLRLASLL QGLEQEEAVS APQWWQWAHK LDEPAKVLTP LRPRPVPPLE
ARPQRFSVTE IETLIRDPYA IYARKILGLK VLDPLDADIA AAERGTIIHE ALEKFVEAYP
RDLPENALQE LINVGEEAFR QAIGRPGVAA FWWPRFLRIA KWIVDYEQEE RAGLRHIHAE
TRGEILIAEL AQPVVLSGKA DRIDEREDGM VNIVDYKTGT VPSIKQVEIG LTPQLPLEAA
MMARGGFRTK DGAPIPPAKA ASLIYLRLTG GETAGEVRAI PDEGADLADN TYAWLVDLLR
QYEAETTPYL SRPRPMFWGR YGDYDHLARV KEWSAAGGDG E
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