| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0111 |
|---|
| Symbol | |
|---|
| ID | 5455415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 123573 |
|---|
| End bp | 124274 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640875671 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001411391 |
|---|
| Protein GI | 154250567 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.953605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCA TCGCGCTGGT GGACGACGAC CGCAATATTC TGACTTCGGT GAGCATCGCG
CTCGAGGCCG AGGGCTACCA CGTTCAAACC TATACGGATG GCGCCGCCGC GCTGGCCGGT
CTTGCCGCCA ATCCGCCGGA TGTCGCCGTT TTCGACATCA AGATGCCGCG CATGGATGGC
ATGGAGCTGC TGCGCCGCCT GCGCCAGAAG TCGGATCTCC CGGTCATCTT CCTCACCTCG
AAGGATGACG AGATCGACGA GCTTTTCGGC CTCAAGATGG GCGCCGACGA TTATATCCGC
AAACCCTTCT CCCAGCGCCT GCTGGTCGAG CGCGTGAAGG CGGTGCTCCG CCGTGCCGCG
CCCAAGGCCG AGGGCCCGCC CGCCGAGGGC GCGGTCAATC AGGTGATGGA GCGCGGCAAG
CTGGTGCTCG ACCCCGAGCG CCACACCTGC ACCTGGGAAG AAAAACCCGT CGTTCTCACC
GTCACTGAAT TCCTGATCCT GCAGGCGCTC GCGCAGCGGC CCGGCTATGT GAAGAGCCGC
GACTCGTTGA TGGACGCCGC CTATGACGAT CAGGTCTATG TCGACGACCG CACCATCGAC
AGCCACATCA AGCGGCTTCG CAAGAAGTTC AAGGAAGTCG ACGATGCCTT CGACGCGATC
GAGACGCTTT ACGGCGTTGG CTATCGCTAT CGCGAAGCCT GA
|
|---|
| Protein sequence | MPTIALVDDD RNILTSVSIA LEAEGYHVQT YTDGAAALAG LAANPPDVAV FDIKMPRMDG
MELLRRLRQK SDLPVIFLTS KDDEIDELFG LKMGADDYIR KPFSQRLLVE RVKAVLRRAA
PKAEGPPAEG AVNQVMERGK LVLDPERHTC TWEEKPVVLT VTEFLILQAL AQRPGYVKSR
DSLMDAAYDD QVYVDDRTID SHIKRLRKKF KEVDDAFDAI ETLYGVGYRY REA
|
|---|
| |