| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0108 |
|---|
| Symbol | |
|---|
| ID | 5454182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 118896 |
|---|
| End bp | 119618 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640875668 |
|---|
| Product | helix-turn-helix type 11 domain-containing protein |
|---|
| Protein accession | YP_001411388 |
|---|
| Protein GI | 154250564 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.403778 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTG CCGACCGCCT TTTCGACATC ATCGAATTTC TTCGCCGCAA CAAGCGGGTG
GTGACGGCGC AGGAGCTTGC CGAAAAGCTC GAAGTCTCCG TCCGCACCAT CTACCGCGAT
GTAGCCGACC TGCAGGCGAG CCGCGTGCCG ATAGAGGGCG AGGCGGGCCT CGGCTATGTC
TTGCGATCCG GCTATGAGTT GCCGCCCCTG ATGTTCACCG AAGATGAGAT CGAGGCTCTC
GTCTTCGGCG CGCGCATGGT CCGCGCCTGG GGTGACGCCG CCTTTACCCA TGCCGCCGAT
GCCGCGGTCG CAAAGATAAG AGCGGTACTG CCCGAACGGC TGGAGCGCAT TGCCGCCGCA
ACGCATGTCA CCGTCGCGCC GGGCCGCACC AACCAGAAGG ATGGCTACAG CCGCCACCTC
TCTCCCGTTC GCCGTGCGAT CCGCGAACGG CGCAAGCTGT CCATCGACTA CGAGGCGCTC
TCGGGCGAGA AATCCCGGCG CGTCCTGCGT CCGCTCGGTC TCGCTTTCTT CGGGCCTTTC
TGGATCCTCG CCGCCTGGTG CGAAAAGCGC GAGGACTTCC GCACTTTCCG CATCGAGCGT
ATCGGGGCAT TGAAAGTCAC TGACGACATA TTCAGGGACG AGAAGGGCAA GACGATGGAA
GACTTCGTCT CCCGCCCGAG CGAAGCATCC TATAGCGGCC TTCCTCAGCC CCACGCGGAT
TGA
|
|---|
| Protein sequence | MRRADRLFDI IEFLRRNKRV VTAQELAEKL EVSVRTIYRD VADLQASRVP IEGEAGLGYV
LRSGYELPPL MFTEDEIEAL VFGARMVRAW GDAAFTHAAD AAVAKIRAVL PERLERIAAA
THVTVAPGRT NQKDGYSRHL SPVRRAIRER RKLSIDYEAL SGEKSRRVLR PLGLAFFGPF
WILAAWCEKR EDFRTFRIER IGALKVTDDI FRDEKGKTME DFVSRPSEAS YSGLPQPHAD
|
|---|
| |