| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0105 |
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| Symbol | |
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| ID | 5454288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 114688 |
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| End bp | 117627 |
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| Gene Length | 2940 bp |
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| Protein Length | 979 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875665 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001411385 |
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| Protein GI | 154250561 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.1277 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAAGCG GCAAGGCGGA AACGGCAATG GCGGAAAAGA CCGGAAGAGC ACTGAAAAAA
GGCGACCATC TCTTCCTGGT GGATGGTTCG GGCTATATTT TCCGCGCCTA TCATGCCCTC
CCGCCGCTGA CGCGGAAATC GGACGGCATG CCGGTCGGCG CCGTCGCCGG CTTCTGCAAC
ATGCTCTACA AGCTCATCGA GGACACCAAG GACGAGTTCG AGCCGACGCA TCTCGCCGTC
ATTTTCGACG CCGCCGCCAA GACCTTCCGC AACGACATCT ACCCCGAATA CAAGGCCAAT
CGTGTCGAGC CGTCGGAAGA CCTGCGCCCG CAATTCGCGC TTGTGCGCGA CGCGACCCGC
GCCTTCGGTG TCCCCTGCAT CGAGAAGAAG GGCTACGAGG CCGACGACAT CATCGCCACC
TATGCGCGCC TCGCGCATGA AGCGGGCGCC CGCGTCACCA TCGTCTCCTC CGACAAGGAT
CTGATGCAGC TCGTGAACGA CAATGTCGAC ATGCTCGATA CCATGAAGCT GAAGACAATC
GCGCGCGAAC AGGTAATCGA GAAATTCGGC GTGCCGCCGG AAAAGGTCGT CGATGTGCAG
GCACTGGCGG GCGACTCCAC CGACAACGTT CCCGGCGTCC CCGGCATCGG TATCAAGACC
GCGGCCCAGC TCATCGGCGA ATATGGCGAT CTCGAAACGC TGCTCGCCCG CGCCGGAGAG
ATCAAGCAGC AGAAGCGCCG CGAAAACCTT ATCGAATTTG CCGAGCAGGC CCGCATCTCC
CGCCGTCTTG TCGAGCTCGA CAATAACGTC CCCCTCGAAG AGCCGCTTGA GGGCATGGGC
GTCCGCGAGC CCGATCCTGA AACGCTGATC GGCTTCTTCA AGGACATGGA ATTCAACACG
CTGACGCGCC GCGTCGGCGA GCGTTTCAAC ATCGACGTCG ACGCCATTCC CGCTGCCGGA
AAGCATGCCC TCATTACCGA TGGCGCGCTC GCTGCCCCCG CGGGCGAGGA GCCGAAAAAG
GAAAAGCAGA CGGTCGCGCG CACCGCACGG GGCGGCACGC CGGGTGCAGT TCCGAAGGGC
ATCGACGCGG ATTTCAACGA TGCGAATTAT GTTGCGGTAA CGGCGCTTGC CGATCTCGAC
GAGTGGATCG CGCGCGCCCG CGAGCAGGGC TTCCTCGCCG TCGATACGGA GACGGACAGC
CTCTTCCCGA TGCAGGCGCG CCTTGTTGGC GTCTCCCTTT CGCTGCTGCC CGGCGAGGCC
TGTTACATCC CGCTGCAGCA TGGCGCTGGC GGCGGCCTCG ACTTCGCGGA TGCCGGTGGC
CAGCCGCAAA TTCCGCTTAA GGAGGCTATC GCCCGCCTGA AACCGCTGCT TGAGGATCCT
TCCATCCTGA AGATCGGTCA GAACCTGAAA TTCGACATGA CGGTCCTGCG TCAGCATGGC
ATCCAATTGA AAGGTCTCGA CGACACGATG CTCATGTCCT ACGCGCTCGA CGCAGGCGTG
CATGGCCACG GCATGGACGA ATTGTCGGAA CTGCATCTCG GCCACAAGCC GATTTCCTTC
GCGGAAGTCG CGGGCAAGGG CAAGGCGCAG ATCACCTTCG ACCAGGTGCC GGTGGACCGC
GCCACCGCCT ATGCCGCCGA AGATGCCGAC GTCACACTCC GCCTCTGGCA TATCCTGAAG
CCGCGCCTCG TCGCGGAGCG TCGCGTTACT GTTTATGAAA CGCTGGAGCG TCCGCTCGTT
TCCGTTCTCG CGGAAATGGA GCGAGCCGGC GTCAAGGTCG ACAAGGCGGT GCTCGCGCGC
CTCTCCGGCG ATTTTTCGCA GAAGATGGCG CAATATGAGG ATGAGATCTA CGAGCTTGCC
GGCGAACGCT TCAATATCGG CTCGCCGAAA CAGCTCGGCG AAATCCTCTT CGACAAGCAA
AGCCTCGAAG GCGGCCGCAA AACCAAGACC GGCGCCTGGT CGACCGACGC CGACACGCTT
GAGGCGCTGG CCGCGAAAGG CCATGAGCTG CCGCAGCGCG TGCTCGACTG GCGCGGGCTT
TCCAAGCTGA AAAGCACCTA TACGGATGCA CTCCCTGAAT ATATCAACCC CGAGACCGGC
CGCATCCACA CCTGCTACTC GCTCGCCTCG ACATCGACCG GCCGCCTCGC GTCAACCGAG
CCGAACCTGC AGAACATTCC CGTGCGCACG GAAGACGGCC GGAAAATCAG AACGGCCTTT
GTCGCCGAGA AGGGAAATCT TCTCATCTCC GCCGACTACA GCCAGATCGA GTTGCGCCTC
CTCGCCCATA TCGCGGATAT CGAGGCGCTG AAGAAGGCCT TTGCCGAAGG TCTCGATATT
CATGCGATGA CGGCATCGGA AATGTTCGGC GTGCCCATCG AGGGCATGGA GTCTTCCGTT
CGCCGCCGCG CCAAGGCCAT CAATTTCGGC ATCATCTACG GCATATCCGC CTTCGGCCTG
GCCAACCAGC TCGGCATCCC GCGGCAGGAG GCGGGAGAAT ATATCGATCG CTACTTCAAG
CGTTTCCCCG GCATCCGCGC CTATATGGAC GACACCCGGG ATTTCGCTCA CAAGAACGGT
TATGTCGAAA CGATCTTCGG CCGCCGCATT CACCTCCCCG CGATCAATTC TAAGAATCCC
GCGGAGAAAA GCTTCATGGA GCGCGCCGCC ATCAACGCGC CGATTCAGGG CTCGGCCGCC
GACATCATCC GCCGCGCCAT GATCCGCATG CCGCAGGCAT TGGCGGATGC GAAGCTCGCC
GCGCGGATGC TGCTGCAGGT TCATGACGAA TTGATTTTCG AAGTGCCGGA AAAGGAAGCC
GAGAAGACGA GCAAGGTGGT GTCGCGCATC ATGTCGGATG CCGCCGCGCC CGCCGTGGCG
CTGACTGTGC CGCTCGATGT CGATGCCCGT GCCGCGAAAA ACTGGGACGA GGCGCATTAG
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| Protein sequence | MASGKAETAM AEKTGRALKK GDHLFLVDGS GYIFRAYHAL PPLTRKSDGM PVGAVAGFCN
MLYKLIEDTK DEFEPTHLAV IFDAAAKTFR NDIYPEYKAN RVEPSEDLRP QFALVRDATR
AFGVPCIEKK GYEADDIIAT YARLAHEAGA RVTIVSSDKD LMQLVNDNVD MLDTMKLKTI
AREQVIEKFG VPPEKVVDVQ ALAGDSTDNV PGVPGIGIKT AAQLIGEYGD LETLLARAGE
IKQQKRRENL IEFAEQARIS RRLVELDNNV PLEEPLEGMG VREPDPETLI GFFKDMEFNT
LTRRVGERFN IDVDAIPAAG KHALITDGAL AAPAGEEPKK EKQTVARTAR GGTPGAVPKG
IDADFNDANY VAVTALADLD EWIARAREQG FLAVDTETDS LFPMQARLVG VSLSLLPGEA
CYIPLQHGAG GGLDFADAGG QPQIPLKEAI ARLKPLLEDP SILKIGQNLK FDMTVLRQHG
IQLKGLDDTM LMSYALDAGV HGHGMDELSE LHLGHKPISF AEVAGKGKAQ ITFDQVPVDR
ATAYAAEDAD VTLRLWHILK PRLVAERRVT VYETLERPLV SVLAEMERAG VKVDKAVLAR
LSGDFSQKMA QYEDEIYELA GERFNIGSPK QLGEILFDKQ SLEGGRKTKT GAWSTDADTL
EALAAKGHEL PQRVLDWRGL SKLKSTYTDA LPEYINPETG RIHTCYSLAS TSTGRLASTE
PNLQNIPVRT EDGRKIRTAF VAEKGNLLIS ADYSQIELRL LAHIADIEAL KKAFAEGLDI
HAMTASEMFG VPIEGMESSV RRRAKAINFG IIYGISAFGL ANQLGIPRQE AGEYIDRYFK
RFPGIRAYMD DTRDFAHKNG YVETIFGRRI HLPAINSKNP AEKSFMERAA INAPIQGSAA
DIIRRAMIRM PQALADAKLA ARMLLQVHDE LIFEVPEKEA EKTSKVVSRI MSDAAAPAVA
LTVPLDVDAR AAKNWDEAH
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