| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0087 |
|---|
| Symbol | |
|---|
| ID | 5454796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 88270 |
|---|
| End bp | 90267 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640875646 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001411367 |
|---|
| Protein GI | 154250543 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.211464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCC GGATTTTGCC ACCGCTGGTC ACGCTGGCAT TGTTCTTCGC CATGTCGGCT
TCGGCCCACG CGGCGCAGAT CAAGCTCGGC GCGGTCGATA TCGACATCGC GACCACCGTG
TCGGCCTCCG CCAGCATGCG TGTGTCGAAG CAGGGCTGCG AATATATCTC CGTCTTTAAC
GGCGGCTGCA CGGCGCCGGG CGGAACGGAT TACGACGTGA ACGCCGATGA CGGCAACGTC
AATGTCGAGC AATGGGAATT CATCTCCGCT CCCGTCAAGG TCATCTCCGA GGCGGATCTG
AAGTGGGACA GGTTCGGCTT CTTCGTGCGT GCGAAAGCCT TCTACGACTA TGTCGGCGAT
CAGGTTCTCG GCCATGGCGA CGGCAAATAC GGCCCGGTCG CCGCGCCCTT CGGTCAGCGC
CGTCCTCTCG ACGACCAGTT CCGTGGCGAC GATGCGCTCA ACAGGCAGGC CCGCTCCTTC
GACCTCCTGG ATGCCTTCGC CTACGGCAAT TTCATCGTCG CCGACATGCC GCTCACCCTG
CGTCTCGGCC GTCAGGCGGT AAACTGGGGC GAAAGCCTTT TCATTCCCGG CGGCGTCTCG
GCCTATCTGC CGCTCGACGT GTCGGCGCTG GTGCGTCCCG GCGTTGAGCT GAAGGAAGTC
TTCCTGCCGC AGAATTCGCT CTTCGCCAGC GTCGGCCTCC CCGCCAATCT CACCTTCGAA
GCGCAATATG TCTTCGAGTG GGAAAGGTCC ATCCTGCCTG CTTGCGGCAG TTTCTTCTCG
CCCAGCGATG CGGCGGCGGG CGGTTGCCGT TATGCCGTGT CCGGCGGCGA AGTCTACAAT
TTCGGCAATG GCACCAGCTA TTCCCCCACC GCCTTTGTGC CGCGCGGCCG CGATCAGGAA
GCGCGCGATC AGGGCCAGTT CGGCCTGGCT CTGCGCTACT ATGCGGAATG GCTTAATCAG
GGTACGGAGC TGTCCGCCTA CTACGTCAAC TTCCACAGCA AGCTGCCCTT CGGCACGACC
ACCGCCTCGA CGCCGACCAC GACGACGGCC GCCTTGCAGC TGATCTGTAA TCCCGCCGTC
CCCGGCTCTT TGTCGGGCCC GGGATGTACC GGCGCCGCAC CCGCGCTTCA GGACGATTTC
GGCCGTCCCG TATCCTACGG CCAGGGCATA TTCGCCCAGG CCGCGGGCGC CAACAAGAAT
CTCATCGTCC AGTTTCCTGA AGACATCGAG ATGTTCGGCA CGAGCTTCAA CACGACCATC
CCGGTCATCG GCGATGCGAC GGCCCTCTCC GGCGAACTCG CCTATTTCCC GGACATGCCG
TTCCAGCTCG ACACGAACGA GATCGTTGGC GCGGACATCC AGAACTTCGG CTACACGCCG
GGTCCGGGAG AAGCATCATA TTATGACGGC CCGCCTGTGC CCTTCGGCGC CGTCATTCCG
GGCTACCGCA CCACGGAAGC CTTGCACGGC CAGGTCTATA CCCTCAGCAC ACTCACCCCG
TCGGATCCGA TCGTGAGCAC GCTCGGCGGC GACCTCCTGA TCCTGGTCGG CAATGTCGGC
TTCCAGTATC TGCCGAATGC GAGCGGCAAC CGCTTCGCCA TTCCGCGCTC GGGCGAAACC
CACCCGAACT TCGGCACCGC CGCCACCTTC GGCGACAATT GCAACAAGGC CGGCACCTGC
AGCATCTCGC CGCTTTACGC CAGCACCTTC TCCTGGGGCT ATCGCATGAT GGCGATGATG
GATTATCACA CCGCTTTCGG CACGCCGGTT ACGCTCAGCC CCATGGTTGT CTGGAGCCAT
GACGTGAACG GCTATTCCGC CGGCCCCATC GGCCCCGGCT TCGTCGAAGG CAAGAAGGCG
GTGACGCTTG GCGTGACCGC GAGCTATCTG GACAGCTACC GGCTGACCGT CGACTACACC
AACAACTTCG GTGCGAAATA TCGCAACGGC TCCTTCGACA AGGATTTCGT CAGCATGACG
GCGTCTTACA CGTTCTGA
|
|---|
| Protein sequence | MKFRILPPLV TLALFFAMSA SAHAAQIKLG AVDIDIATTV SASASMRVSK QGCEYISVFN
GGCTAPGGTD YDVNADDGNV NVEQWEFISA PVKVISEADL KWDRFGFFVR AKAFYDYVGD
QVLGHGDGKY GPVAAPFGQR RPLDDQFRGD DALNRQARSF DLLDAFAYGN FIVADMPLTL
RLGRQAVNWG ESLFIPGGVS AYLPLDVSAL VRPGVELKEV FLPQNSLFAS VGLPANLTFE
AQYVFEWERS ILPACGSFFS PSDAAAGGCR YAVSGGEVYN FGNGTSYSPT AFVPRGRDQE
ARDQGQFGLA LRYYAEWLNQ GTELSAYYVN FHSKLPFGTT TASTPTTTTA ALQLICNPAV
PGSLSGPGCT GAAPALQDDF GRPVSYGQGI FAQAAGANKN LIVQFPEDIE MFGTSFNTTI
PVIGDATALS GELAYFPDMP FQLDTNEIVG ADIQNFGYTP GPGEASYYDG PPVPFGAVIP
GYRTTEALHG QVYTLSTLTP SDPIVSTLGG DLLILVGNVG FQYLPNASGN RFAIPRSGET
HPNFGTAATF GDNCNKAGTC SISPLYASTF SWGYRMMAMM DYHTAFGTPV TLSPMVVWSH
DVNGYSAGPI GPGFVEGKKA VTLGVTASYL DSYRLTVDYT NNFGAKYRNG SFDKDFVSMT
ASYTF
|
|---|
| |