| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0072 |
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| Symbol | |
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| ID | 5455261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 73647 |
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| End bp | 74873 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640875631 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001411352 |
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| Protein GI | 154250528 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.928138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.608061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCCA TGCAGCCATA TACGCTCGGC ACGGATAGTC CTCCCAGCGA CATCGGCATT
TCCGACCGCT ACCAGGAGAT CAAGTTTCGC GTTTTCGATC TGACGCTGGA ATATCTGGAT
CAGCAGGGCG TCGAAGGAGA GGCGATCTCC TTGACCGCGC TGCAGGATGA AATAGCCCGT
GCCATCGCAG TCGTTCTCAT GTCGCGAGGC ATCGCGCTGA ACATGCGCGA GCGCGCGCAG
CTCATCGAGG ACGTGCAAAA CGAAATCGTC GGCTTCGGGC CGCTGGAGCC TCTGCTTCGC
GATCCGACGA TAGACGACAT CATCGTCAAC GGACCCGCCC GCATCTATGT CGAACGGCAT
GGTGAGCTTG AACTGGTGCA AACCCGGTTT CGGGACACCA CTCACCTGAT GAATGTGATC
CAGCGGATCG TCAGTCCGAT CGGGCGCCGC GTGGACGAAG GCACGCCTTA TGTGGATGGG
AGATTGCCCG ACGGCTCCCG TGTCAACGTG ATCATTCCGC CTGTCGCGCT GGACGGTCCG
ATTCTCTCGG TCCGCAAGTT CAAGCATATT CCGCTGACGG GTGACGATCT CGTGCGCAGC
AATATGATGA CGCCCGAGAT GTTGAAATTT CTCTCCGGTG CGGTGCGGGG AAAGCGCAAC
ATTCTGATCT GCGGCGGTAC GGGCTCCGGC AAGACCACGC TGTTGAATGT CCTCAGTTCC
TATATCGGCA TAAAGGAACG GCTCGTCACG ATCGAGGATG CGGCCGAGTT GCAGCTCCAG
CAGTCTCATG TTGTCCGTCT GGAAACGAGG CCCTCCTCCC CCGATGGCGC GAACGAGGTC
ACGGCGCGCG ATTTGCTGCG CAACGTCCTG CGCATGCGCC CGGACCGGAT CATTCTCGGC
GAAGTCAGGT CGAGTGAGGC AATCGAAATG CTGCAGGCGA TGGGCACCGG GCATGACGGC
TCCATGGCCA CGCTCCACGC AAACGGCCCG CGCGATGCGC TTGAGCGTCT CGAAATGCTG
ATCGGCCTGC ACGGGTTCTC GGCCGATCTT CAGGCTGTCA GGCGCTTCAT CGCGGGCGCC
ATTCACATCG TGGTGCAGAC CGCGCGGCAG TCCGACGGCA AGCGGCGAAT AGTTTCAATA
TGCGAAGTGA CGGGCATGGA AGGTCCGACC TATTCCATGC GCCAGATATT CTCGGATGAG
GAAGTCGAGA CGAAGCGGGT TGTCTAG
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| Protein sequence | MKSMQPYTLG TDSPPSDIGI SDRYQEIKFR VFDLTLEYLD QQGVEGEAIS LTALQDEIAR
AIAVVLMSRG IALNMRERAQ LIEDVQNEIV GFGPLEPLLR DPTIDDIIVN GPARIYVERH
GELELVQTRF RDTTHLMNVI QRIVSPIGRR VDEGTPYVDG RLPDGSRVNV IIPPVALDGP
ILSVRKFKHI PLTGDDLVRS NMMTPEMLKF LSGAVRGKRN ILICGGTGSG KTTLLNVLSS
YIGIKERLVT IEDAAELQLQ QSHVVRLETR PSSPDGANEV TARDLLRNVL RMRPDRIILG
EVRSSEAIEM LQAMGTGHDG SMATLHANGP RDALERLEML IGLHGFSADL QAVRRFIAGA
IHIVVQTARQ SDGKRRIVSI CEVTGMEGPT YSMRQIFSDE EVETKRVV
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