| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0070 |
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| Symbol | |
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| ID | 5455094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 71065 |
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| End bp | 72450 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640875629 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001411350 |
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| Protein GI | 154250526 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.838423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGGG AAAGGGGTGG CAGTGTGAGG CAGGTGTTCC ATCGATTGAG GACGGTGCGC
TGGCCGATGC TCGCCGTTCT TCTGACCGCT CTTCTCCTGC CGCAAGGTCC GGTCCTTGCC
GCCGAAACGC TCAGCATTTC GATTGGCGGA CAGCGTATCC TGAAGCTTGG CCAGACCGTG
GACCGGATTG CGATCGCAAA TCCCTCGATC GTCGACGTCA AGGTCATTTC CTCGCGTGAG
CTGCGCATTC TCGGCCAGAG CGAGGGCACG ACCGATCTCG ACATCTGGTT TGCCGGCGGT
GCGTCCAAAT CCTATTACGT GGTGGTGGGT GCCGACATTA CCGGCCTCCA ATCGGAGTTG
GCGCGCGATC CGGCGCTTGC GGATGTGAAG GCGACGGAAA CGGGCAAGGG CGTGGTCCTG
AAAGGTCAGG TCTACAGCCT CGAAGCGCAG CAGCGCGCCC GCGAGATCGC GCGCTCTTAT
CTAGGCAAGG ACGCTGGAGA CATGCTGACC GTCGCCGACC GGCGGATGGT GGCGGTCGAA
GTGCGGTTTG CCGCCGTCTC CACCAGCACC CTGAAAGCAC TGGGATTGAA CTTCCAGAGT
CTGGACAACA GTTTTCAGTT TGCCGCCATC GGGCCGAACG CCTCTTCGAG CTTCGGCTAC
ACGCCGGGGG CAGGTCTCGA TCCGGATACG AGCCTGCCGC TCAGCCAGGC TTTCAATCTC
TTTCTGGCAT GGCCGGGAAG CAATCTTCTC GGCGTCATCA GCGCATTGAG CAGCGCCAAT
CTCGCTCAGC TTTTGGCGGA GCCCACATTG CTTGTGAGAA GCGGCGAGGA CGCGGATTTT
CTGGCCGGTG GCGAGATACC GATTCCCGTT CCTCAATCCG GCGTCGGCAA TGGCACCGTG
ACGATTGAAT ACAAGAAATT CGGTGTGCAG CTGGGCGTTG CCGCCACCGT TCTCGACAAT
GATCGGATCG TTCTCAAGGT CAGCCCGGAA GTGAGCGAAC TCGATTACAC CAACGCGCTT
GTCGTTCAGG GCTTTCGCAT TCCAGCCCTC CGGACGCGCT CGACGCGGAC CACGATCGAG
CTGGGCGATG GCCAGAGCTT CGTGCTGGCA GGGTTGATGT ACAGCACCTC GGGAAATATC
GAGGATCGTA TTCCCGGCAT CGGTGAATTG CCTGTCATCG GCACATTTTT CAAGCGCACA
CAGAATGCGC GCGAACGGCA GGAGTTGATC ATCGTCGCAA CACCTCGGCT CGTTTCGCCG
ATGGAGGCGG GAGAGGTGCC CCCTCTGCCC GGTGAAGGCC ATGTCTACGA TTCGGACCTC
GGGCAAAACC TTCTCAACGT GAACACGCTC GACAAGCACA TCGTCAAACA CGGTCTGATG
AGGTAG
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| Protein sequence | MMRERGGSVR QVFHRLRTVR WPMLAVLLTA LLLPQGPVLA AETLSISIGG QRILKLGQTV
DRIAIANPSI VDVKVISSRE LRILGQSEGT TDLDIWFAGG ASKSYYVVVG ADITGLQSEL
ARDPALADVK ATETGKGVVL KGQVYSLEAQ QRAREIARSY LGKDAGDMLT VADRRMVAVE
VRFAAVSTST LKALGLNFQS LDNSFQFAAI GPNASSSFGY TPGAGLDPDT SLPLSQAFNL
FLAWPGSNLL GVISALSSAN LAQLLAEPTL LVRSGEDADF LAGGEIPIPV PQSGVGNGTV
TIEYKKFGVQ LGVAATVLDN DRIVLKVSPE VSELDYTNAL VVQGFRIPAL RTRSTRTTIE
LGDGQSFVLA GLMYSTSGNI EDRIPGIGEL PVIGTFFKRT QNARERQELI IVATPRLVSP
MEAGEVPPLP GEGHVYDSDL GQNLLNVNTL DKHIVKHGLM R
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