Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0068 |
Symbol | |
ID | 5454363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 67908 |
End bp | 69587 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875627 |
Product | polypeptide-transport-associated domain-containing protein |
Protein accession | YP_001411348 |
Protein GI | 154250524 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 0.503427 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGTTCC GGAAAAAAAT CAATTTTCTT GTCACGGCTT CGGTCCTTGC CATGGTTGCC CATCCGGCAC TTGCGCAGGG CGTTCCCCCC CTTTCGGCGC CTTCGCCCGG TACGGTTCTT TCGCCGCCGC CCCCCTCGCC GGAACTGCAA AGGCGAGAAG TGCCGGAATT GCGCGAGGAT CTGGGACTGC CGGACGGATC GGAGAAGGTG CTCAACTTCC GCGTATCGAG CGTTCGGGTG GTGGGCGCAA CAGTGATCGA TGAAAAGGTT CTTTCCGCGC AGTTCGACCC CTTGCTCAAC CGCCAGATTA CCGCGGCCGA CCTTCGCAGC GCCCTCGACA GAACCAACGC GCTTTATACC GAGGCAGGCT ATGCGCTTGG CCGGGCCTTT GTTCCCGTGC AGGTTCTCCA GGGCGGCGTG CTGATCGTCC GCGTCGTGGA AGGCTATATC GGCGAGATTC AGATCGACGC GGCGGACCCC GCCGTACGGA AAATGGTCGA GGGGTTCAGC CGGCGGATCG TCGCGGAGCA ACCTCTTCGC ACAGCGTCTC TTGAGCGCTA TCTGTTGCTG ATCAGCGATA TTCCGGGCGT GACGCTTGGT GGCCAGCTGC AGTCGATGGA TGTCTATTCG GGTGCCGCCA CTCTCGCCCT CAAGGTCGAA AGCAAGAAGT TCACCGTCTC GTCGGCGGTC GACAACAGGG CCAATCTGGA CGACGCACCG TTTCAGGCCT ATCTGACCGG CGCACTGAAC AACATCTTCG GCTTTGGCGA CGAGGTTTCC ATCACGGGTC TCGCCACGCC GGAGCTTGAA TCGCAGCAGT ATTTCCGCGG CGCTTTCTCG ACCTTTATCG GAACCGATGG CCTGCGGGCT TCCGTCGGCG CGGCCTACGC CAAATCGGAA GCGGCCGACA TGCCGCCCGG CATCGAACTC ATCAGCACCA GCACACAGGT CGATTTCCTG ATGAGCTATC CGATCATCCG CGCGACCGCT CAGACCCTCA CTGCCTTTTT CGGGGCCTAC ATCACGGACG CGGAGAACGA ACTCAACGGC TTCACCTTCA GCAAGGATGC GATCCGGGCC GCGCATATCG GGGGCAGCTA TGTCGCGAAG CTCGACGAGC GCACCTCGCT CAGTTCGCAT ATGCGCGTGA CGCAGGGATT TTCGATATGG GATGCGGGGC CGGAGAACAC GCTGCACTCG CGGCTCGGCG CCACAGCCAA TTTCACGAAG CTGCAGAGCG GCGCGAGCCT CGCTTACGCC GCAACCGAGC GGCTTTTACT GAGCTTCCGC GTCGAAGGCC AGTACAGCCC GGACTCTCTG TTCAGCTCCG AGGAGATCAG CTTCGGCGGC GCGCGGTTTG CGCGCGGCTA CAACAACTCC GAGATTTCCG GCGATAGCGG CCTCGGCGCT TCGGTTCAGG CGAGCTACCG CTTCGATGTC GACCTGTTCG GCGGCTGGTC GGTAACGCCC TACACGTTCC TCGATCATTC GCAGGTGTGG AACACGGATG TGGACCGGCA AGGCGATGCG CGACTGCTCT CCACCGGCAT CGGCGTCACG CTTTCCAACC GCCGCTGGCT GTCGGTCGGT CTTGAGCTCG ACAAGCCGAT AAACCGCACC CCGATCTCGC AAGACAACAA GGACCCCCGG CTTTTCGTCT CGTTCGAAGT CCGGTTCTGA
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Protein sequence | MMFRKKINFL VTASVLAMVA HPALAQGVPP LSAPSPGTVL SPPPPSPELQ RREVPELRED LGLPDGSEKV LNFRVSSVRV VGATVIDEKV LSAQFDPLLN RQITAADLRS ALDRTNALYT EAGYALGRAF VPVQVLQGGV LIVRVVEGYI GEIQIDAADP AVRKMVEGFS RRIVAEQPLR TASLERYLLL ISDIPGVTLG GQLQSMDVYS GAATLALKVE SKKFTVSSAV DNRANLDDAP FQAYLTGALN NIFGFGDEVS ITGLATPELE SQQYFRGAFS TFIGTDGLRA SVGAAYAKSE AADMPPGIEL ISTSTQVDFL MSYPIIRATA QTLTAFFGAY ITDAENELNG FTFSKDAIRA AHIGGSYVAK LDERTSLSSH MRVTQGFSIW DAGPENTLHS RLGATANFTK LQSGASLAYA ATERLLLSFR VEGQYSPDSL FSSEEISFGG ARFARGYNNS EISGDSGLGA SVQASYRFDV DLFGGWSVTP YTFLDHSQVW NTDVDRQGDA RLLSTGIGVT LSNRRWLSVG LELDKPINRT PISQDNKDPR LFVSFEVRF
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