Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0030 |
Symbol | |
ID | 5453814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 34929 |
End bp | 35570 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875589 |
Product | HAD family phosphatase |
Protein accession | YP_001411310 |
Protein GI | 154250486 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR02247] Epoxide hydrolase N-terminal domain-like phosphatase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.181132 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGAAG CGGTTATCTG GGATTTTGGC GGCGTGCTCA CATCGAGCCC GTTCGAGGCG TTCAACCGCT ACGAGACGGA ACGCGGGCTG CCGAAGGATT TCATTCGCGG CATCAACGCG GTCAATCCCG ACACCAATGC CTGGGCGCTG TTCGAGCGCA GCGAATGCAC GCTGGACGAT TTCGACCGTT TGTTCGCCGA AGAATCCGAG GCGCGCGGCA CGCGCATTCC CGGCCGCCAC ATCATCGAGC TTCTGTCGGG CGACATTCGC CCTGAAATGG TGACGGCGCT GAAACGCTGC AAGGAACGCG CGAAGGTCGG CTGCATCACC AATAATGTGT CGGCGGGCGA AGGCGCGGGC ATGGCGCGCT CCGGCGAGAA GGCGGCCGCC GTTGCCGAAG TCATGTCGCT GTTCGACCAT GTGATCGAGA GTTCGAAAGT CGGCATCCGC AAGCCCGATC CGCGCATCTA CGAAATGGCC TGCGAGGCGC TCGGCGTTTC CCCTGCGTCA TCGGTTTATC TCGACGATCT CGGCATCAAC CTGAAGCCCG CCAGACTGCT CGGCATGACG ACGATCAAGG TCGTGACGCC GGAACAGGCG CTGAAGGAAC TGGAAGACGC GGTCGGCTTT CCCCTTTCCT GA
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Protein sequence | MVEAVIWDFG GVLTSSPFEA FNRYETERGL PKDFIRGINA VNPDTNAWAL FERSECTLDD FDRLFAEESE ARGTRIPGRH IIELLSGDIR PEMVTALKRC KERAKVGCIT NNVSAGEGAG MARSGEKAAA VAEVMSLFDH VIESSKVGIR KPDPRIYEMA CEALGVSPAS SVYLDDLGIN LKPARLLGMT TIKVVTPEQA LKELEDAVGF PLS
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