| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0013 |
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| Symbol | |
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| ID | 5456646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 15461 |
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| End bp | 17152 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875572 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_001411293 |
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| Protein GI | 154250469 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.192625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.000890742 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGAAGA ATCCTTCCGT CAAATACCGC GCCTTCGCAC CGGTGCCCTT GTCCGACCGG
CAATGGCCGT CGAAGACGAT CACCAAGCCG CCGATCTGGA TGAGCACCGA TCTCCGCGAC
GGCAATCAGG CCCTTTTCGA GCCGATGAAC GCGGAACGGA AGCTCCGCAT GTTCGAGATG
CTGGTGAAGA TCGGCTTCAA GGAAATCGAA GCCGGTTTCC CTTCCGCCTC GGACACGGAT
TTCGGTTTCA TCCGCAAGCT CGTGGAAGAA GGCCGCGTGC CGGACGATGT TCATATCGAA
GTGCTGACGC AGGCGCGGCC CGAACTCATC GCGCGCACGA TGGAATCGCT GAAAGGCGCG
AAGAACGCCA TCGTCCACGT CTATAACGCG ACGGCGCCGA ATTTCCGCGA GGTGGTTTTC
CAGCAGGGCA AGCAGGGCGT GAAAGCCATT GCGACGGAAA GTGCCCGCCA GATAAAGGAA
ATAGCGGCCA CGCAGCCCGA GACCAACTGG ACCTTCCAGT ACAGCCCGGA AGTCTTTTCC
GGCACCGAAC TCGACTTCGC GAAAGAGGTT GTCGATGCGG TGACGGAGAT ATGGGAAGCG
GGACCGGAGC GAAAAGTCGT CATCAACCTG CCGGCGACGG TGGAAATGGC GACGCCGAAC
ATCTATGCCG ACCAGATCGA ATGGATGCAC CGCAATCTCG AACGGCGCGA CGGCATCATC
TTGTCCGTAC ACCCGCATAA TGACCGCGGC ACGGCGGTGG CGGCGGCGGA GCTGGCGATC
ATGGCGGGCG CCGACCGCGT GGAAGGCTGT CTCTTCGGCA ATGGCGAGCG GACGGGCAAT
GTCGATCTCG TCACGCTGGC GCTCAATCTC TACAGCCAGG GCATCGATCC GGGACTGGAT
TTCGCGCAGA TCAACGAGAT CGCGCGCACG GCGGAATATT GCACGCAGTT GCCGATCCAT
CCGCGCCACC CCTATGTCGG CGATCTCGTC TTCACGGCTT TTTCCGGCTC GCATCAGGAT
GCGATCAAGA AGGGACTTGC CGCCTACAAG GCGGGCGACA TCTGGCAGGT GCCCTACCTG
CCGCTCGATC CGAAGGATCT GGGCCGCACC TATGAGTCGA TCATTCGCGT GAACAGCCAG
TCCGGCAAGG GAGGCGTGTC CTATCTGCTG GAAGCGGAAT ATGACCTTCG ACTGCCGCGC
CGGCTGCAGG TCGAGTTCAG CTCCGCCGTC CAGCGCGTGA CGGACGATAC GGGCAAGGAA
GTGCGAGCGG CCGACATCTG GCGGATATTC GAAGAGGAAT ATCTCACCCG CGCGGAGCCC
ATCGAGTATC TGTCCCATTC TCTCTATGAC GAGAGCGGCA AGCAGGGCGT GAAGATCCGT
ATACGGCGCT TCGGCAAGGA AGAGGAACTC TCCGGTTCCG GCAACGGCCC AATCGACGCG
GCGATGGATG CTCTGAAGCT CGGCGTTGAA CTCCGTCACT ATGAAGAGCA TTCGATCGGA
TCGGGCACCG ACGCGAAGGC GGTCGCCTTC ATGGAGGTCG CGGACCCCGA ACATCCGGGC
GATCTTTTCG GTGTCGGCAT CGACGCCAAC ATCATCACCG CCTCGTTCAA GGCGATGCTG
AGCGCCGCCA ACCGGGCGGC GGCGCGGCGG CCGAAATCCG AATGGGCGCG GCTCTGCGGC
GGCGCCGAAT AG
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| Protein sequence | MLKNPSVKYR AFAPVPLSDR QWPSKTITKP PIWMSTDLRD GNQALFEPMN AERKLRMFEM
LVKIGFKEIE AGFPSASDTD FGFIRKLVEE GRVPDDVHIE VLTQARPELI ARTMESLKGA
KNAIVHVYNA TAPNFREVVF QQGKQGVKAI ATESARQIKE IAATQPETNW TFQYSPEVFS
GTELDFAKEV VDAVTEIWEA GPERKVVINL PATVEMATPN IYADQIEWMH RNLERRDGII
LSVHPHNDRG TAVAAAELAI MAGADRVEGC LFGNGERTGN VDLVTLALNL YSQGIDPGLD
FAQINEIART AEYCTQLPIH PRHPYVGDLV FTAFSGSHQD AIKKGLAAYK AGDIWQVPYL
PLDPKDLGRT YESIIRVNSQ SGKGGVSYLL EAEYDLRLPR RLQVEFSSAV QRVTDDTGKE
VRAADIWRIF EEEYLTRAEP IEYLSHSLYD ESGKQGVKIR IRRFGKEEEL SGSGNGPIDA
AMDALKLGVE LRHYEEHSIG SGTDAKAVAF MEVADPEHPG DLFGVGIDAN IITASFKAML
SAANRAAARR PKSEWARLCG GAE
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