| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0012 |
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| Symbol | |
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| ID | 5456184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 13995 |
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| End bp | 15233 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640875571 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_001411292 |
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| Protein GI | 154250468 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.814207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.000215226 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTCTATC ACATCTACGA ATTGAACCAT GCGGCGGTGG CGCCTTTCCG GGCAGCGGCC
GAGGTTGGCC TGTGGGCGCT GCGGCATCCG CTCAACCCCT TCGCGGAGAC GCTGCCGAGC
AAGACGCTGG CGGCGGCCTT CGATGTTTTC GAGACGACGA CGCGGCGTTA CGGCAAACCG
GAATTCGGAC TTCACGAGAC GACCATCGAC GGCAAGCCGG TTCCGATCAC CGAACGGATC
GTGTGGGAGC GGCCTTTCTG CAAGGTGATC CATTTCGAAC GCGAGCCATC GGCGATGAAG
GGCGTGGCGC CGCAGCAGAA GCTTTTGATC GTCGCGCCGC TTTCCGGCCA TTACGCGACG
CTGCTGCGCG GCACGGTGGA AGCGATGCTT CCCTATCACG AGGTCTACAT CACCGATTGG
GTGGACGCGC GGAAAGTGCC TTTGACGGAA GGCTCTTTCG ATCTCGACGA CTATATCGAC
TATGTGATCG AGATGTGCCA CGCACTGGGG CCGGACCTGC ATCTGCTCGC CGTCTGCCAG
CCCTCGGTGC CGGTCTTCGC GGCTGTCGCC GTGATGCATG ACAATGACGA CGCCTATGTG
CCGCTCAGCA TGACGCTGAT GGGCGGACCC ATCGACACGC GCGAAAGCCC GACCGAGGTG
AACAATCTCG CCACCGAGCG CGGCACCGAA TGGTATGAAC GCCACGTCAT CACCACCGTT
CCCTGGCCGC ATCCGGGCGT GATGCGCCGC GTCTATCCGG GCTTCGTGCA GCTTTCGGGC
TTCATGGCGA TGAACCTCGA CCGCCACATG GACGCGCATT GGAACTATTT CGACCACATG
GTCGAGGGCG ATGGCGACTC GGCGGAGAAG CATCGCGAGT TCTATGACGA ATATCTCTCG
GTCATGGACA TGACCTCGGA GTTCTATCTC CAGACGGTCG ACGAGGTGTT CGTGAAACAC
TCGCTGCCCA AGGGCGAGTT CACCCATCGC GGCAAGACGG TGCGGCCCGA CGCCATTACC
AGAACGGCGC TGATGACTGT CGAGGGCGAG AAGGACGACA TCTCGGGCGT CGGCCAGACG
AAGGCGGCGC ACAAGCTTTG CAAGAACCTA CCGGCCAGCA TGAAGGCCCA TTGGGAGCAG
CCGGGCGTCG GACATTACGG CGTCTTCAAC GGCACGAGAT GGAAGAGCGA GATTGCGCCG
CGCGTACGCG AATTCATGGC CGCCCACGCC AAGAGGTAG
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| Protein sequence | MLYHIYELNH AAVAPFRAAA EVGLWALRHP LNPFAETLPS KTLAAAFDVF ETTTRRYGKP
EFGLHETTID GKPVPITERI VWERPFCKVI HFEREPSAMK GVAPQQKLLI VAPLSGHYAT
LLRGTVEAML PYHEVYITDW VDARKVPLTE GSFDLDDYID YVIEMCHALG PDLHLLAVCQ
PSVPVFAAVA VMHDNDDAYV PLSMTLMGGP IDTRESPTEV NNLATERGTE WYERHVITTV
PWPHPGVMRR VYPGFVQLSG FMAMNLDRHM DAHWNYFDHM VEGDGDSAEK HREFYDEYLS
VMDMTSEFYL QTVDEVFVKH SLPKGEFTHR GKTVRPDAIT RTALMTVEGE KDDISGVGQT
KAAHKLCKNL PASMKAHWEQ PGVGHYGVFN GTRWKSEIAP RVREFMAAHA KR
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