Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0008 |
Symbol | |
ID | 5455107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 9139 |
End bp | 11466 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640875567 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001411288 |
Protein GI | 154250464 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000000000321042 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATCCC GGAAGGGCAA ATCCGGCCCT GGCAAACGAG GCGGCGCGGA GGAAGAAGAC TGGACCATCG TTCGGATGGC CGGTCTGCGT CCGGTCCGCC TCGGCGTAAA CGCCAACGCC GATGCACGGC TCGACGAGGA AGGCGACGGC GACGACATGG GCTGGGACGA CGACTGGGAA GGCCCCGGCA TGCGCCGCAC CGAGCCTACA TTCACGCGTG GCAAGCCCCG CAAGCCCACA GCCAAACCGG CGAAGAAACC CGCCGCGAAA AAATCCCGTC CGAAGAAGCC GCCGGTGCTG CGCGCGCCGA CAGAAGATGA GCGGCCCGGC TCCCGCACCC CGCCGCGCAA ATCCGCGCGC CGCGGCGCCC CGCCCCGCAA GGGAAAGCCC ACTCTTCTCG GCCGCCTCGC CTATGGCGGC GCCGTCCTCA TGCTCTGGGG CGTCATCGCC TTTGGCGGCC TCCTCTTCTG GTATGGGCTC CATCTGCCGG ATACGTCGGG CCTCTATAAC GTCAAGCACA CGCCCTCCCT CTCCATCGTC GCCACCAATG GCGAGGTGCT GAGCCATCGC GGCGATCTGA TGAGCGGCTA TGCCTCTCTC TCCGATCTGC CGCCCTGGGT GCCCGCCGCC GTCCTCGCCA CGGAGGACCA GCGTTTCTAC TGGCATTTCG GCGTCGACCC CATCGGTCTC GCCCGCGCCA CCATCACCAA TATTCGCGCT GGCGCCTATG TGCAGGGCGG CTCGACGGTG ACGCAGCAGC TGGCGAAGAA CATCTTCCTG AAGCCCGATC GCACCATCGC CCGCAAGATC GAGGAAATGG TGCTGGCCGT CTGGCTGGAG CTGCGCTTCA CCAAGGAAGA AATCCTGACG CTCTATCTGA ACCGCGTCTA TTTCGGCGGC GGCGCCTATG GCCTCGAAGC CGCCTCCGAG CGTTATTTCC GCAAGCCCGC CCGCGCCCTC ACTTTGCCGG AAGCCGCCAT GCTCGCCGGT CTTTTGAAGG CGCCGTCCCG CTACTCGCCG ACAAACAATA TCGAGCTCGC GCGCAATCGC GCCGCCATCG TGCTGCAGAA CATGGTCAAT GCCGGCTACA TCACGCAGGA AGAAGCGCGC ACCGCGAATG TCAGTCCGGC GCGGCTTGAA GGCTATGCGG CGCGCGGCTC GATCAATTAT TTCGTCGATT GGGTCGCCGA AGCCGTACCG GATTATGCCG GCCGCCCGGA TACCGACGTC AATGTGATGA CGACAATCGA TCCCGTCCTC CAGCGCGAGG CCGAAAGAGT GATCGACGCC ATGCTGGCGG GCGAGGGCGC GGCCGTGAAT GCGACACAGG CCGCCCTCGT CGCCATGACG CCGGATGGCG CGGTGCGCGC CATGGTCGGC GGCCGTTCCT ACGCGCAAAG CCAGTTCAAT CGCGCGGTGC AGGCAAAGCG CCAGCCCGGC TCCGCCTTCA AGCCCATTGT CTATCTCGCC GCTCTCGAGC GCGGCCTCAC GCCGGATACG CTGCGCGTCG ACCGCCCCAT CGAATATGGC GGCTGGGCGC CGGCGAATTA TTCCGGCCGC TTCGAGGGCG AGATGACGCT CCGCACCGCG CTGGCGAAGT CGGTCAACAC GGTCGCCGTC CAGGTCGCAC GTGAAACCGG CATCCGCAAT GTCATCGCCG CCGCGCGGCG TCTCGGCTTG CAGGAAGACC TGCCGTCAAA CCTGTCGCTG GCGCTCGGCT CCGGCAGCGT CAATCTTCTG GAACTCACCG CGGCTTACGC CACCTTCGCC AATGGCGGCT ATGGCGTCAT TCCGCATGGC ATCGAGGAAG TCCGCTCCGA ATCCGGCGAG GAACTTTACC GGCGCCAGGG TTCGGGCATC GGCCGCGTCG TCGATGGCCG CACCGTCGGC CAGATGAACA ACATGCTGCA GGCCGTCATG GCCTATGGCA CGGGCCGCAA CTCTGCCTTG GGCGCGCGGC CGAGCGGCGG CAAGACGGGC ACCAGCCAGG ATTTCCGCGA TGCCTGGTTC ATCGGCTACA CCGCCGATCT CGTGGTCGGC GTCTGGGTCG GCAACGACAA TGGCGCGCCG ATGGAAAAGG TAACGGGCGG CACCCTTCCG GCTCACATCT GGCACGACTT CATGATGAAG ACGCAGGAAG GCGTGCCGAT AGCGCAGCTG CCGGAGGAAA TGCCGGTGGC AACCGCCTCC GCCAGCATCG CCGCGCCCGC CGCCATGCAG GAAGCAGCGC CCGCCGAATA TGAGTGGGAA CAGCCGGGTT TCTTCGAGCG CCTCTTCGGC ATCGGCGGCA ACGAGGACTC CACGCTCCGT GCGGGCGGCC GCCGCTAG
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Protein sequence | MSSRKGKSGP GKRGGAEEED WTIVRMAGLR PVRLGVNANA DARLDEEGDG DDMGWDDDWE GPGMRRTEPT FTRGKPRKPT AKPAKKPAAK KSRPKKPPVL RAPTEDERPG SRTPPRKSAR RGAPPRKGKP TLLGRLAYGG AVLMLWGVIA FGGLLFWYGL HLPDTSGLYN VKHTPSLSIV ATNGEVLSHR GDLMSGYASL SDLPPWVPAA VLATEDQRFY WHFGVDPIGL ARATITNIRA GAYVQGGSTV TQQLAKNIFL KPDRTIARKI EEMVLAVWLE LRFTKEEILT LYLNRVYFGG GAYGLEAASE RYFRKPARAL TLPEAAMLAG LLKAPSRYSP TNNIELARNR AAIVLQNMVN AGYITQEEAR TANVSPARLE GYAARGSINY FVDWVAEAVP DYAGRPDTDV NVMTTIDPVL QREAERVIDA MLAGEGAAVN ATQAALVAMT PDGAVRAMVG GRSYAQSQFN RAVQAKRQPG SAFKPIVYLA ALERGLTPDT LRVDRPIEYG GWAPANYSGR FEGEMTLRTA LAKSVNTVAV QVARETGIRN VIAAARRLGL QEDLPSNLSL ALGSGSVNLL ELTAAYATFA NGGYGVIPHG IEEVRSESGE ELYRRQGSGI GRVVDGRTVG QMNNMLQAVM AYGTGRNSAL GARPSGGKTG TSQDFRDAWF IGYTADLVVG VWVGNDNGAP MEKVTGGTLP AHIWHDFMMK TQEGVPIAQL PEEMPVATAS ASIAAPAAMQ EAAPAEYEWE QPGFFERLFG IGGNEDSTLR AGGRR
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