Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0006 |
Symbol | |
ID | 5455632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 5920 |
End bp | 6519 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640875565 |
Product | endopeptidase Clp |
Protein accession | YP_001411286 |
Protein GI | 154250462 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.194315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 6.80644e-21 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGAAACG ACGAAAAGCC TGGAACGCCC GATATCGACG CCCTCAAGGG CCAGTTCATG CCGCTGGTCG AGCATGGCCT CTTCAAGTCG CGCACGGTGC TCGTCACCGG CGAGATCAAC GACCGCCAGG CGCGCGCCGT CTCCGAGCGC CTGCTGGCGA TGGCCGGCGA GAGCGACGAC CCGATCACGG TGATCGTCTC CTCGCCCGGC GGCCATGTCG AATCCGGCGA CATGATCCAC GACATGATCA AATACATCAA ACCGCGCGTC CGCGTTCTCG GCACCGGTTG GGTCGCCTCG GCCGGCGCGC TCATCTATGT CGCCGCCGAC CGCGAGGACC GCTACTGCCT GCCCAACACG CGCTTCCTGC TTCATGAGCC GCGCGGCGGC GTCGGCGGTT CCGCCACCGA GATCGACATC CAGGCGCGCG AAGTGCTGAA GATGCGCGAA CGCCTCAACA AGATCTTTGC CGAAGCCACC GGCCAGCCGA TCGAAAAGAT CGTCAAGGAC ACCAACCGCG ATCACTGGAT GAACGCGGAA GAAGCCAAGG AATACGGCGT CGTCGGAAAG ATCATTCGCT CCGCCGCCGA AATCGCCTGA
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Protein sequence | MRNDEKPGTP DIDALKGQFM PLVEHGLFKS RTVLVTGEIN DRQARAVSER LLAMAGESDD PITVIVSSPG GHVESGDMIH DMIKYIKPRV RVLGTGWVAS AGALIYVAAD REDRYCLPNT RFLLHEPRGG VGGSATEIDI QAREVLKMRE RLNKIFAEAT GQPIEKIVKD TNRDHWMNAE EAKEYGVVGK IIRSAAEIA
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