Gene Plav_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_0006 
Symbol 
ID5455632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp5920 
End bp6519 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content64% 
IMG OID640875565 
Productendopeptidase Clp 
Protein accessionYP_001411286 
Protein GI154250462 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0740] Protease subunit of ATP-dependent Clp proteases 
TIGRFAM ID[TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.194315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.80644e-21 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAAACG ACGAAAAGCC TGGAACGCCC GATATCGACG CCCTCAAGGG CCAGTTCATG 
CCGCTGGTCG AGCATGGCCT CTTCAAGTCG CGCACGGTGC TCGTCACCGG CGAGATCAAC
GACCGCCAGG CGCGCGCCGT CTCCGAGCGC CTGCTGGCGA TGGCCGGCGA GAGCGACGAC
CCGATCACGG TGATCGTCTC CTCGCCCGGC GGCCATGTCG AATCCGGCGA CATGATCCAC
GACATGATCA AATACATCAA ACCGCGCGTC CGCGTTCTCG GCACCGGTTG GGTCGCCTCG
GCCGGCGCGC TCATCTATGT CGCCGCCGAC CGCGAGGACC GCTACTGCCT GCCCAACACG
CGCTTCCTGC TTCATGAGCC GCGCGGCGGC GTCGGCGGTT CCGCCACCGA GATCGACATC
CAGGCGCGCG AAGTGCTGAA GATGCGCGAA CGCCTCAACA AGATCTTTGC CGAAGCCACC
GGCCAGCCGA TCGAAAAGAT CGTCAAGGAC ACCAACCGCG ATCACTGGAT GAACGCGGAA
GAAGCCAAGG AATACGGCGT CGTCGGAAAG ATCATTCGCT CCGCCGCCGA AATCGCCTGA
 
Protein sequence
MRNDEKPGTP DIDALKGQFM PLVEHGLFKS RTVLVTGEIN DRQARAVSER LLAMAGESDD 
PITVIVSSPG GHVESGDMIH DMIKYIKPRV RVLGTGWVAS AGALIYVAAD REDRYCLPNT
RFLLHEPRGG VGGSATEIDI QAREVLKMRE RLNKIFAEAT GQPIEKIVKD TNRDHWMNAE
EAKEYGVVGK IIRSAAEIA