Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_1814 |
Symbol | aksA |
ID | 4617668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | + |
Start bp | 1648950 |
End bp | 1650170 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639784898 |
Product | trans-homoaconitate synthase |
Protein accession | YP_931306 |
Protein GI | 119873299 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR02090] isopropylmalate/citramalate/homocitrate synthases [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.770908 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.00000383108 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATTATC ACGACGGGCG GTTATATATA ATACACAAAG CTTATATAGG TGTAGATTTT AGAGCTTATG GCTTCGGGGC TCGTGTAATT AAAATCTTTG ATACTACTCT GCGCGATGGT GAACAAATGC CTGGCGTCGC TCTGTCTAAT GAAGAAAAAT TACAGATCGC CCTAGCTCTA GACGAAGCTG GCGTAGATAT GATAGAGGCC GGGTTTGCGG CTGTGTCAAA AGACGAGCAG ATAGCCATTA GGCAGATCGC AAAAGAGGTC TATAGAGCCG ATGTTGTTAG CTTAGCTAGA ATGTCGAAAT CTGACGTAGA TGCGGCAGTA TCAGCTGATG TAGATATGGT ACATGTATTT ATAGCGACAT CAGATATACA TTTAAAATAT AAACTTGGCA TATCAAGAGA GGAGGCTCTA CGTAGAGTAG AGGAGGTTGT ATCTTATGCA AAATCATATG GTGTGAAAGT TTTATTCAGC GCTGAGGATG CCACTAGAAG CGACCTAGAG TTTTTAGCTA GAGTATATAA GACAGCTATT GAAGCAGGCG CAGACGAGAT AAACGTCCCA GATACAGTTG GCATAATGAC GCCAAGCCGT ATGGCATATT TAATACGTTT CCTCAGGGAG AGACTTCCCC CGGTGCCTAT GCATATACAT TGTCACGACG ACTTTGGCAT GGCTGTTGCA AATACAATTA CGGCGATAGA AAACGGTGCT GACGTAGCTC AAGTCGTTGT TAATAACTTT GGCGAAAGAG CCGGTAATGC GGCTTTAGAA GAGGTCGTGG CGGCGTTACA TTTTCTACTT GGCATGAGGA CAAATGTAAA ACTGGAAAAG CTCTACGAGC TTTCTCAGCT AGTTTCAAAA CTATTTGGCG TGCCAGTGCC TCCAAACAAA GCTGTTGTTG GGGAAAACGC CTTTAGCCAC GAGGCGGGTA TACATGTACA CGGCGTGTTA AACAACCCGT TTACATACGA GCCGATGAGA CCCGAAGACG TTGGAAACAA GAGGAGGATT GTTTTAGGTA AACACTCTGG GAGACATGCA GTTGAGTGGG CATTGAAAAA CATGGGGATT AACCCAAGTG AAGACTTAGT GGAGTACGTC CTCAACACAG TAAAGGAGCT TGCAGTTAAA AAGGTGAAAA TTGACGAGAG TATACTTAAA GAAATTGTCA CTACTTATAT AACTGCAAAA TCCAGGAGAT ATGCCATATA A
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Protein sequence | MHYHDGRLYI IHKAYIGVDF RAYGFGARVI KIFDTTLRDG EQMPGVALSN EEKLQIALAL DEAGVDMIEA GFAAVSKDEQ IAIRQIAKEV YRADVVSLAR MSKSDVDAAV SADVDMVHVF IATSDIHLKY KLGISREEAL RRVEEVVSYA KSYGVKVLFS AEDATRSDLE FLARVYKTAI EAGADEINVP DTVGIMTPSR MAYLIRFLRE RLPPVPMHIH CHDDFGMAVA NTITAIENGA DVAQVVVNNF GERAGNAALE EVVAALHFLL GMRTNVKLEK LYELSQLVSK LFGVPVPPNK AVVGENAFSH EAGIHVHGVL NNPFTYEPMR PEDVGNKRRI VLGKHSGRHA VEWALKNMGI NPSEDLVEYV LNTVKELAVK KVKIDESILK EIVTTYITAK SRRYAI
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