Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_1107 |
Symbol | |
ID | 4616924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 994716 |
End bp | 996638 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639784201 |
Product | beta-lactamase domain-containing protein |
Protein accession | YP_930621 |
Protein GI | 119872614 |
COG category | [R] General function prediction only |
COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.519523 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 79 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGTATTT TGTGGCGCGT GTCTTTTTCA GAAATTGAAA GTAGGGTGAG GTCTATTCTA TCTGGCGCCG AGGTCTCTAG AGTTAGCTAC GAGGGGCCAA ACCTCTGTAT CTACGTGAAG AGGCCCTCCG AGGCTCTCCT AGATATGGTC GGCGAGGTGG CCAAGACCCT TAAGAAGCGC GTAGTTTTGA GGACTGAGGC CTCCAGCAGA CTGCCGGAGA AAAAGGCCTC CCAGATAATT AGGGAAATCG TCGGCGAAGT TGACGACATT GTTTTTGAAG AAAGCGGCGA CGTCTATATC TACCTCGCTA AGCCGATGCG GGAGAAGGAG ATAAGAGCTA TCGCGCGAGA GGTTTTTGTA AGGACCGGCT GGAGGGCTGT GGTAGAGAGC GGGGTGCCTC GGGATAAGGT TAAGCTCCCC GCCCACGAGA TCGTGGGAGT GCGTCAGATT TTCCACGGGG CCTACGCCCA GAGGAGGGAG CTTATGGAGC ACTTGGCGAG GTATATACAC CAAGAGCCGG TGGTTAAAGA GGGGGCTATA ACTGTGACTT TTCTCGGAGC CGCGATGGAA GTAGGCCGTA GCGCAATACT GGTCAGCACC ACCGAGAGCA ACATACTGCT CGACTGCGGG CTGAAGCCCG GCCAATACGA CGAGGACTTC CCCCTGCTCG ACGCCGTAGA TATCGATAGG CTAGACGCCG TTGTATTAAC CCACGCCCAT ATGGACCACG TGGGCTGTCT CCCGTTTCTC TACAAGTACG GCTATAGAGG GCCTGTCTAC ATGACCGACC CTACTAAGTA TCAAACGTTT ATACTCCTCA TGGATTACAT AGAGCTGAAG GAGAGGGAGG GGCTGGAGCC GGCTTTCTCT AGGGCCGACG TGGAGTCCGT CATATACCAC ACTATAACGC TGGACTATGA AGAGGTCACA GACATAGCGC CAGACGTCAA ACTCACTTTC TACGACGCGG GCCACGAGAT TGGGTCGGCC ATGGCACATC TACATATAGG CAACGGGAGG TATAACATCT TGTATACTGG GGATTTCAAA TACGGCAAGA CGAGACTTTT GAACCGCGCT GTGTCTAAGT TCAAGAGGGT CGAAATGCTC ATAATGGAGT CTACCTACGG CGGTAGAGAT GACGTGCAAC CGCCTAGGGT TGAGGCTGAG AACGCCTTGG CTAAACACGT GGCTGAGGCC GTGTCGAGAG GCGGCAAGGT GCTGATCCCC GCCTTCAGCA CGGGGAGGGG CCAGGAGATC CTCTACATCC TCAACAAAAT GATTGAGGGG GGTTTGATCC CCAGGGTGCC CGTCTATGTA GATGGGATGA TTGTAGAAAC GCTCAACGCA TACCTCATGT ACCCCCACTA CCTAAACCCC GAGGTTGCCG AGGAGATCTA CGGCGGGGTT AACCCCTTCA CTACCTCTGG GAGCGTGGTC ATAGTGGACC GCGCCAAACG GGTGGAGGAT AGGATAAACC AAGTGGCTAA GATAGCCCAG AGCGAAGAGC CTGCCGTCAT AATTGCGCCC CACGGCATGT TAAACGGCGG GCCTGTCGTG GACTACTTCT CACAGCTGGC GCACGACCCT AGGAATAAGC TTGTGTTTGT CTCCTACCAG GCGGAGGGGA CGCTTGGTAG AAGGATATTA AACGGCGAGC GGGAGTTCAC AATTAGAAGT CTAGTTGGCG GAGAGTCTAA AGTTGAGGTA CGTATGGAGG TCGTATCTAT ACCTGGCTTC TCAGGCCATA GCGATAGGAG AGAGCTTATG AAATATGTAG AACATATAGA GCCTAAGCCT AAGAAAATAG TTTTAGTACA CGGGGAGCCT TCTAAAATCA TCAGCCTCGC CACGTCTATA GAGCTGAAGT ATAAGATAAC TACAATTATA CCAAAAGTTG GCGAGAGGAT AAGAGCGTTG TGA
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Protein sequence | MCILWRVSFS EIESRVRSIL SGAEVSRVSY EGPNLCIYVK RPSEALLDMV GEVAKTLKKR VVLRTEASSR LPEKKASQII REIVGEVDDI VFEESGDVYI YLAKPMREKE IRAIAREVFV RTGWRAVVES GVPRDKVKLP AHEIVGVRQI FHGAYAQRRE LMEHLARYIH QEPVVKEGAI TVTFLGAAME VGRSAILVST TESNILLDCG LKPGQYDEDF PLLDAVDIDR LDAVVLTHAH MDHVGCLPFL YKYGYRGPVY MTDPTKYQTF ILLMDYIELK EREGLEPAFS RADVESVIYH TITLDYEEVT DIAPDVKLTF YDAGHEIGSA MAHLHIGNGR YNILYTGDFK YGKTRLLNRA VSKFKRVEML IMESTYGGRD DVQPPRVEAE NALAKHVAEA VSRGGKVLIP AFSTGRGQEI LYILNKMIEG GLIPRVPVYV DGMIVETLNA YLMYPHYLNP EVAEEIYGGV NPFTTSGSVV IVDRAKRVED RINQVAKIAQ SEEPAVIIAP HGMLNGGPVV DYFSQLAHDP RNKLVFVSYQ AEGTLGRRIL NGEREFTIRS LVGGESKVEV RMEVVSIPGF SGHSDRRELM KYVEHIEPKP KKIVLVHGEP SKIISLATSI ELKYKITTII PKVGERIRAL
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