| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0951 |
|---|
| Symbol | |
|---|
| ID | 4617896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 844317 |
|---|
| End bp | 844952 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639784049 |
|---|
| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit |
|---|
| Protein accession | YP_930470 |
|---|
| Protein GI | 119872463 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.168208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAA ATAAGCTTAT GGAGTTAAAC ATGCCGACGT ATTACCTTAA GACGCCGCTT
TCTACAGAAG ATATTGCAAA GCTACGCATA GGCGATACAG TATATATAAG CGGCGTAATT
GTCAGTGCTA GAGATTCAGC TCATAAGAGA ATGCTAGAAT ATGTAGAACG CGGGGAAAAG
TTGCCAGTGG ACTTAAAAGG CGGCGTCATC TACCACGCAG GGCCTGTCGC TAAAAAAACC
GATAGAGGTT GGGAAATTAT TAGCATGGGT CCAACAACGT CGGCTAGAAT GGAGACTTTT
GAAGCTGATG TTATTGAGAA ACTTGGCGTA AAGTTAGTTG TTGGCAAAGG CGGCATGGGA
AAGAGGACCG CAGAGGCTAT GAAAAAACAC GTAGCAGCAT ACGCAATTTT TACAGGCGGC
GCTGGAGTTC TCGCAGCAAA GGCTATAAAG AGGGTGATCG ACGTCTATTG GCTAGACTTG
GGGATTGCAG AGGCTATGTG GGTTCTCGAA GTCGAGAATT TTGGGCCGTT GACCATAATG
ATAGATCCAA CAGGCAGGAA TTACTACGAT GAGCAAAGAG AGGAGGCGAG GAGGAGAGTA
CCAGAGATTC TAAAGTTGAT GGAGTGGCCT TATTAA
|
|---|
| Protein sequence | MFKNKLMELN MPTYYLKTPL STEDIAKLRI GDTVYISGVI VSARDSAHKR MLEYVERGEK
LPVDLKGGVI YHAGPVAKKT DRGWEIISMG PTTSARMETF EADVIEKLGV KLVVGKGGMG
KRTAEAMKKH VAAYAIFTGG AGVLAAKAIK RVIDVYWLDL GIAEAMWVLE VENFGPLTIM
IDPTGRNYYD EQREEARRRV PEILKLMEWP Y
|
|---|
| |