Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_0703 |
Symbol | |
ID | 4616694 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 638539 |
End bp | 641922 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639783798 |
Product | DNA-directed RNA polymerase subunit B |
Protein accession | YP_930224 |
Protein GI | 119872217 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.347908 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0027158 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGTAGATC TTCTTCCACT CCCCGTCGTC ACAAGCCAGC AGGATGATTC ATTCCCCACA AAAGATGACA GATGGACTTT AGTAGAGAGA TTTATTAGAG ATAAAGGACT TGCTAACCAT CAGATAAAGT CTTTTAACGA CTTTTTAGAT AAGAAACTCC CTAAGATTGT AGAAGACTTT AAAGTTATTG AGACGGAAAT TAAGGGCCTT AAGCTAGTTT TAGAGCGTAT TGAAGTTGGC TGGCCTAGGA TTAAAGAAAG CGACGGCTCT GAATCGTTAA TCTATCCCAT GGAGGCCCGG CTACGTAATG CGACATATTC CGCTCCACTA TATTTAACCG CCACTCTTTA TGTAGACGAT GAGCCATATG TCACAGAGAC TTTTTACATA GGCGAATTGC CCATAATGGT TAAATCCAAG AGGTGTAATC TAACTAGACT TAAGCCTAGT GAGTATGTAA AGAAATTTGA AGATCCGCAA GACTTCGGCG GCTATTTCAT AATAAATGGG AGTGAACGCG TTATTATCTC TCAAGAGGAT TTAGTAACCG ATAGGCCTAT TTATGATAAG GGAGATAAGC CATCGGTAAA ATATATTGCA AAAACCATCT CAACCGGCAT AGGCTATAGA AGTACGCTTG TTGTAGAACT TAACAAAGAC GGCATTATAT ATGTCACCCT TTCTGCCATG CCTGTAAAAA TACCGTTTCC AGTATATATG AAAGCTCTTG GTCTTGAGAC TGACGAAGAC GTTGTCAAGG CGGTTTCTGA CGACCCAGAA ATACAAAAAG AGCTACTGCC CTCTCTTATA GCGGCTAACC AAATTGCCAT AACAAAGGAG GATGCGTTAG ATTTCATAGG CGGTAAAGTT GCCGTGGGCC AACCTAAACC TATTAGAGTT GAAAAAGCGC TTCAACTACT TGACCGTTAT TTTCTCCCTC ATTTAGGCAC TACTGTACCT GATGAGAAAA AACAACAGGA AATTAGACTG AAGAAGGCCC TCATGCTGGG CCAAATTGTC AAGGGCCTTA TAGAGTTAGA CCTCGGCAGA AGAAAGCCCG ACGATAAAGA CCATGTCGCT AACAAAAGAG TTAGACTAGT GGGCGATTTG ATGACTCAAC TCTTCAGGAC AGTCTTTAAG CAGTTTTTGC AAGAGTTAAA AAGCCAGTTA GAGAAGTATT ATGCGCGGGG TAGAATTCCG CATATTCAGA CTATAGTGAG ACCAGACATA ATCACAGAAC GTGTGAGACA AGCGCTCGCT ACAGGGAATT GGGTTGGTGG TAAAACAGGC GTATCCCAGA TATTAGATCG CACTAATTAT ATGTCAACTT TAAGCTACTT AAGACGTGTT GTATCATCGC TTTCTAGGAC ACAACCTCAC TTTGAGGCGC GTGATCTTCA TCCAACTCAA TGGGGTAGAC TTTGTGCCGT GGAAACGCCA GAGGGACAAA ACGTCGGTCT TGTTAAAAAC TTGGCGCTTC TCGCAGAGAT AACTACAGGT GTTGACGAGG GGGAGGTAGA GCAGTTGTTA TATAACCTAG GCGTTGTGCC TATTTTAAAG GCCAGAGACG AGGGCATCCG TGGTGCGGAG GTCTACATCA ATGGGAGATT AATAGGTATA CATCCTAACC CAGACGAATT AGCCAGGACA GTAAGAAGCC TAAGAAGACA GGGGAAAATA AGTGATGAAA TAAACATAGC TGTCTTAAAC AATGCTGTAT ATGTCAACTG CGACGGAGGC CGCATTAGAA GGCCTCTCTT AGTCGTAGAA AATGGAAAAC TCAAATTAAC AAAAGAAATT GTTGAAAAAG TTAGACGTGG CGAATTGACG TGGGACGACT TAGTAAAAAT GGGAGTTATA GAGTACCTAG ATGCTGACGA AGAGGAGAAT GCCTATATCG CCACAGATCC TCACGATGAC TTAAGCAAAT ACACACATGT CGAGATTATA CCATCTGCTA TACTTGGCGC CGTGGCGTCT ATAATACCCT ATCTTGAGCA TAACCAATCG CCGCGTAATC AGTATGAAGC TGCGATGGCT AAACAATCTC TCGGACTACC GCAGTCTAAC TTCCTCTATA AACTTGATTC ACGAGGCCAC ATGTTATATT ACCCCGAAAG ACCTATTGTC ACAACAAGAG GCTTAGAGCT TATAGGCTAT TCAAAAAAGC CGGCTGGACA AAACGCCGTT GTTGCACTTC TCACATACAC GGGCTACAAT ATGGAAGACG CCATTATTTT AAACAAAGCC GCAGTAGAGC GTGGCATGTT CCGTTCGGTC TTCTACCGCA CTTATGAAAC AGAGGAACAG AAATATCCTG GCGGAGAGGA GGATAAAATA GAAGTACCAG ATAGTTCAGT TAAAGGTTAT AGAGGACCTG AAGCATACAG CCACCTAGAC GAAGACGGCA TAGCTCCACC AGAGGTCTAT GTTAGTAGCA ATGAGGTTAT TATAGGCAAA ACGTCGCCGC CTAGATTTTA CACGACGCTA GAGACAGAAC GTATTTTAAA AGAGAGAAGA GATTCCTCTG TTGCTGTAAG ACGCGGCGAG AAGGGCATTG TAGATAGGGT AATTATTACG GAGTCTCCAG AAGGCAATAG GTTAGTAAAA GTGAGACTGA GAGAACTTAG GATTCCAGAA CTAGGCGATA AGTTTGCCTC TCGCCATGGC CAAAAGGGCG TCGTTGGCAT GATATTGAGA CACGAGGATA TGCCGTTTAC GGAGGAGGGC ATAGTCCCAG ATATAATCGT TAATCCACAT GCGTTGCCAT CGCGTATGAC TGTAGGACAG CTTTTAGAAA GTATAGCAGG GAAAATAGGG GCGTCTCTTG GCGCATTAGT AGATGCAACG CCGTTCGAAG GTGTGAAAGA AGAAGAACTA AGAAAACTAC TAATGAAGCT AGGCTATAAG TGGGATGGCA AAGAGGTTAT GTACAGTGGA ATAACAGGCG AAAAGCTTGT GGCAGATATC TTCATAGGCG TAGTCTACTA CCAGAAACTG CATCACATGG TTGCCGATAA GATCCACGCA AGAGCAAGAG GGCCTGTCCA GATCTTAACT AGACAACCAA CTGAGGGGCG TTCGCGCGAG GGCGGCCTTA GGTTAGGCGA AATGGAAAGA GACGTCTTGA TCGCACACGG CGCCTCGGCG TTGCTATATG AAAGACTTGT CGAATCTAGT GACAAATATA CGATGTATGT ATGTGAGCTG TGCGGGCTCC CGGCTTATTT AGATGCCAGA ACAAACAAGC CGAGATGTCC GATACACGGC GACACTGGGC AGTTCGCTAA AGTAATAGTG CCGTATGCAT TTAAACTACT TCTGCAAGAG CTGATAGCCC TTGGCATATA TCCAAAGCTC GAGCTTTCTG AAATTTTAGA ATAG
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Protein sequence | MVDLLPLPVV TSQQDDSFPT KDDRWTLVER FIRDKGLANH QIKSFNDFLD KKLPKIVEDF KVIETEIKGL KLVLERIEVG WPRIKESDGS ESLIYPMEAR LRNATYSAPL YLTATLYVDD EPYVTETFYI GELPIMVKSK RCNLTRLKPS EYVKKFEDPQ DFGGYFIING SERVIISQED LVTDRPIYDK GDKPSVKYIA KTISTGIGYR STLVVELNKD GIIYVTLSAM PVKIPFPVYM KALGLETDED VVKAVSDDPE IQKELLPSLI AANQIAITKE DALDFIGGKV AVGQPKPIRV EKALQLLDRY FLPHLGTTVP DEKKQQEIRL KKALMLGQIV KGLIELDLGR RKPDDKDHVA NKRVRLVGDL MTQLFRTVFK QFLQELKSQL EKYYARGRIP HIQTIVRPDI ITERVRQALA TGNWVGGKTG VSQILDRTNY MSTLSYLRRV VSSLSRTQPH FEARDLHPTQ WGRLCAVETP EGQNVGLVKN LALLAEITTG VDEGEVEQLL YNLGVVPILK ARDEGIRGAE VYINGRLIGI HPNPDELART VRSLRRQGKI SDEINIAVLN NAVYVNCDGG RIRRPLLVVE NGKLKLTKEI VEKVRRGELT WDDLVKMGVI EYLDADEEEN AYIATDPHDD LSKYTHVEII PSAILGAVAS IIPYLEHNQS PRNQYEAAMA KQSLGLPQSN FLYKLDSRGH MLYYPERPIV TTRGLELIGY SKKPAGQNAV VALLTYTGYN MEDAIILNKA AVERGMFRSV FYRTYETEEQ KYPGGEEDKI EVPDSSVKGY RGPEAYSHLD EDGIAPPEVY VSSNEVIIGK TSPPRFYTTL ETERILKERR DSSVAVRRGE KGIVDRVIIT ESPEGNRLVK VRLRELRIPE LGDKFASRHG QKGVVGMILR HEDMPFTEEG IVPDIIVNPH ALPSRMTVGQ LLESIAGKIG ASLGALVDAT PFEGVKEEEL RKLLMKLGYK WDGKEVMYSG ITGEKLVADI FIGVVYYQKL HHMVADKIHA RARGPVQILT RQPTEGRSRE GGLRLGEMER DVLIAHGASA LLYERLVESS DKYTMYVCEL CGLPAYLDAR TNKPRCPIHG DTGQFAKVIV PYAFKLLLQE LIALGIYPKL ELSEILE
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