Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_0670 |
Symbol | sdhB |
ID | 4616490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 608399 |
End bp | 609112 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639783764 |
Product | succinate dehydrogenase iron-sulfur subunit |
Protein accession | YP_930191 |
Protein GI | 119872184 |
COG category | [C] Energy production and conversion |
COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.764736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 0.83201 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGG TAGTAATAAA AATAAAAAGA TACGACGGTA AAAAGAGTTG GTGGCAGGAG TATAAAGTTG AGGCGCCGTC GGAAAGAGTC TCTGTGCTAG ATCTTCTACT TAAAGTCAAA GAAGAACAGG ACCCTACACT TGCAGTACGC TATAGTTGTC GCATGGCTAT ATGTGGCTCA TGTGGCATGG TTATAAATGG CGTACCTCGC CTGGCGTGTC AAACATTGCT CTCTGATTTA AAAACGGACG TAATAACAGT AGAGCCCTTG TGGAATCATA AAGTGATAAA AGACCTAGTT GTAGATTTAG AGCCTGATTT TGAAAAAGTT AAGAAGGTAA AACCCTATAT AATTCGTGAC ATAAAAGAAA TCTATGAAAC AGACAGAGAA TTTGGGCAAA AGCCCGAGGA GTTAGACAAA TACTACAACT TTGCCTATTG TATTCAATGT GGCTTATGTA TGGCCGCTTG CCCTGTTGTT GCCACCCACG AGAGATTTCT CGGGCCTATG GCGCTCAATG CTGCATATAG ATGGAGCGCG GATAGCAGAG ACCAAGGCTG GAAAGAGCGA GCTAAAATCA TCGACGTAGA AGAGGGCGTA TGGGGTTGCC ACCTGGCTTA TACGTGTAGC GCTGTTTGTC CACGTGGTGT CGATCCAGGT TTTTCAATAC AATTGCTGAA AGCTGCATTA TTAAGACGTG CAAAAAGGCC TTAA
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Protein sequence | MKSVVIKIKR YDGKKSWWQE YKVEAPSERV SVLDLLLKVK EEQDPTLAVR YSCRMAICGS CGMVINGVPR LACQTLLSDL KTDVITVEPL WNHKVIKDLV VDLEPDFEKV KKVKPYIIRD IKEIYETDRE FGQKPEELDK YYNFAYCIQC GLCMAACPVV ATHERFLGPM ALNAAYRWSA DSRDQGWKER AKIIDVEEGV WGCHLAYTCS AVCPRGVDPG FSIQLLKAAL LRRAKRP
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