| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3446 |
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| Symbol | |
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| ID | 4625600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 4260240 |
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| End bp | 4264280 |
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| Gene Length | 4041 bp |
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| Protein Length | 1346 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639798563 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_944729 |
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| Protein GI | 119947049 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00428905 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTTACT CTTATACTGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAG
GTGATGGAAA AACCATACCT GTTGTCGATT CAACTAGATT CATTCAAACG ATTCATTGAA
GTCGATTTAA CTGGAGAAGT TGGTCTTGAG GCTGCTTTTA ACAGCATCTT CCCTATCGCC
AGTTATTCCG GTACATCAGA ATTGCAATAT GTCAGCTACC GTTTAGGTGA GCCGGTATTT
GATGTGAAAG AATGCCAAAT CCGTGGAGTA ACATACTCTG CTTCATTGCG CGTTAAATTA
CGTCTTGTTA TTTATGATCG TGATGCACCA GCCGGCACGG TTAAAGATAT TCGTGAACAA
GAAGTATACA TGGGTGAAAT GCCACTCATG ACAGAAAATG GTACTTTTGT AATCAATGGT
ACTGAGCGTG TTATCGTTTC GCAATTACAT CGTAGTCCTG GTGTCTTCTT TGACCACGAT
AAAGGTAAAA CGCATAGTTC TGGTAAAGTA CTTTATAATG CACGCGTAAT TCCATACCGC
GGTTCTTGGT TAGACTTTGA ATTTGATCCT AAAGATAACC TCTTTGTTCG TATTGACCGT
CGTCGTAAAC TCCCTGCAAC TATTATGTTG CGAGCGCTTG AGTATTCGAC ACAAGAAATT
CTGGCCATAT TCTACGACAC AACTAAATTT GACATCAAAG ACGGTGTTAT TTCAATGTCG
CTAATTGCTG ACCGCTTACG TGGTGAGATG GCGTTATTTG ATATTGCAGC AAACGGCAAG
ATTTATGTTG AGCAGGGCAA GCGTATTACA GCGCGCCATA TTAAACAGCT TGAAAAAGAT
AATATCAATA CGCTTGACGT GCCAGTTGAG TACATTGCAG AGAAAGATCT GGTTGTTGCT
AAAGATTATA TCAGCAAAGA AACCGGTGAA ATCATTGTTA GTGCCAACGA CATATTAACG
CTTGAAATAT TAGCGGAACT GACTCAGTCA GGCATTACAT CCTTTGATAT TATTTATACT
AATGAACTGG ACTGCGGTTC GTTTATTTCC GATACATTAC GTGTTGATAG TTCAAGTAAT
CGCCTTGAAG CGTTAGTTGA AATCTACCGC ATGATGCGTC CGGGTGAGCC ACCAACAAAA
GACGCAGCAG AAGGTTTATT CCATAACCTG TTTTTTGCTG AAGAACGTTA CGAGCTTTCT
AAAGTTGGCC GTATGAAGTT CAACCGTCGT GTTGGTATTG ATGGTGATGA AGGCGCTGGT
ATTTTATCCA AGGATGATAT ATTAAGTGTG ATGAAAACAC TGATTGCTAT CCGTAATGGT
GATGGCATTG TCGATGATAT CGACCATCTT GGTAACCGCC GTATCCGTTG TGTTGGTGAA
ATGGCTGAAA ACCAATTCCG TGTTGGTTTA GTCCGTGTTG AGCGTGCCGT AAGAGAACGT
CTTTCTCTGG GCGATCTTGA TGCGACTATG CCACAAGATT TAATCAATGC TAAACCTATT
TCTGCTGCTG TTAAAGAGTT CTTTGGTTCA TCACAACTGT CACAGTTTAT GGATCAAAAT
AACCCGCTTT CAGAAGTAAC CCATAAACGT CGTATTTCAG CATTAGGGCC TGGTGGTCTA
ACGCGTGAAC GTGCCGGCTT TGAAGTACGT GACGTACATC CAACGCATTA CGGTCGTTTG
TGTCCAATCG AAACCCCAGA GGGACCAAAC ATTGGTCTGA TTAACTCTTT GGCAACTTTC
TCACGCACCA ACAGTTACGG TTTCTTAGAA ACACCTTACC GTAAAGTTGA AAATGGTAAA
CCAACAGATC AAGTTGAATA CCTTTCTGCG ATTGAAGAAG GTTCATTCGT CATTGCACAG
GCAAGCGCCA GTATTGATGA AAATGGTTTG CTGGACGAAG AATTGATCCC TTGTCGTCAT
AAAGGTGAGT CTACCTTTTT GAGCCCTGCG GATATCGATT ATATGGACGT ATCACCACAG
CAGATTATTT CTGTTGCGGC GTCATTGATT CCATTCCTAG AGCATGATGA TGCTAACCGT
GCCTTAATGG GTTCGAACAT GCAACGTCAA GCCGTTCCAA CACTACGTGC GGACAAACCG
CTTGTAGGAA CAGGTATTGA ACGTCGTCTT GCAATCGATT CTGGTGTAAC AATCATCGCT
AAACGTAGTG GTGTTATTGA TTATGTCGAT GCATCACGTA TTGTTGTTAA AGTTGATGAT
AACGAGCTCC TTCCTGGTGA AGCGGGTATC GATATTTACA ATTTAACTAA ATACACCCGT
TCAAATCAGA ATACCTGTAT TAACCAAAAA CCTACCTGTG AACCTGGCGA ACCTATTGTT
CGTGGTGATG TACTGGCCGA TGGCCCGTCA ACAGATATGG GCGACCTTGC TTTAGGCCAA
AACATGAAGA TTGCCTTCAT GCCTTGGAAT GGTTACAACT TTGAGGATTC AATCCTTATT
TCTGAGCGTG TTTCACAGGA AGACAGATTC ACTACAATTC ATATTCAAGA GTTCTCATGT
GTTGCACGTG AAACTAAATT GGGTAGTGAA GAAATTTCTG CCGATATCCC GAACGTTGGC
GAAGCGGCAC TAAGTAAACT TGATGAATCA GGTATTGTAT ACGTAGGTGC TGAAGTTAAA
CCTGGCGATA TACTTGTTGG TAAAGTGACA CCTAAAGGTG AAACACAGCT AACACCTGAA
GAAAAACTAT TACGAGCTAT CTTTGGTGAG AAAGCATCAG ACGTTAAAGA CAGTTCTTTA
CGCGTGGCAG CCTCAACCTA CGCAACGGTT ATTGACGTAC AAGTCTTTAC TCGAGATGGT
GTTGAAAAAG ATAAACGTGC GCTTGAAATA GAAGAAATGC AGCTTAAAGC GGCGAAGAAA
GATTTAACTG AAAAGTTCAA AATCTTAGAA AACGCAATTT ATGAAAAAGC CTTAGCGATT
CTTGTTGGTG CCGGTCAGGA TGAAGCGCGT CTGCTACAGA TGCCTCGTGC ACAGTGGTTA
GAAGTGCAGA TTGATGATGA AACTAAACAG TCTTATTTAG ATCAAATCAT TACTCAATAT
GATGAAGTCA AAGCTGATTA CGATAAAGAG TTTGATATCA AACGTCGCAA AATCACTCAA
GGTGATGATC TTGCACCTGG TGTTCAGAAG ATTGTTAAAG TGTATCTAGC TGTCCGTCGT
CGCCTGCAAC CTGGTGATAA AATGGCGGGT CGTCACGGTA ACAAAGGTGT TATTTCAAAC
ATCGTGCCCG TAGAAGATAT GCCGCATGAT GAGTTTGGTG TTCCTGTTGA TATCGTACTT
AACCCGCTGG GTGTACCGTC ACGGATGAAC ATCGGTCAGG TTTTGGAAAC TCACTTAGGT
CTTGCTGCCA AAGGTGTGGG CGAAAAACTT GAGCGTATGA TTAAATACCA GCGTGACATT
GAAATTACTA AAGTGCGCGA ATTCGTTCAG AAACTATACT CTTTCGGTGA TGCGCCATGT
CATGTTGATC TTAACGATTT TGATGATGAA GCGGTAATGC GTTTAGCTAA GAACCTGTAC
AAAGGGTTAC CTGTTGCAAC ACCTGCATTT GATGGTGCCA ACGAAGGCGA AATCCGTGAG
CTGTTACGCA TGGCTGATTT GCCTGAATCA GGTCAATTAC AACTGACCGA TGGCCGTACG
GGTATTCAGT TTGAACGTCC TGTGACCGTT GGTTATATGT ACATGCTGAA ACTGAATCAC
TTGGTTGATG ACAAGATGCA TGCGCGTTCT ACTGGCTCTT ACAGCTTAGT AACACAGCAG
CCGCTTGGTG GTAAAGCGCA GTTCGGTGGA CAACGTTTTG GTGAGATGGA AGTATGGGCA
TTAGAAGCTT ATGGTGCTGC TTACACTCTA CAAGAAATGC TGACGGTTAA ATCCGATGAT
GTTAACGGTC GTACTAAGAT GTATAAAAAC ATCGTTGACG GCGACCATAG AATGGAACCG
GGCATGCCTG AATCATTCAA CGTATTGTTG AAAGAGATCC GTTCATTAAG CATCAACATT
GAACTAGATG AAAGTAACTA A
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| Protein sequence | MGYSYTEKKR IRKDFGKRPQ VMEKPYLLSI QLDSFKRFIE VDLTGEVGLE AAFNSIFPIA
SYSGTSELQY VSYRLGEPVF DVKECQIRGV TYSASLRVKL RLVIYDRDAP AGTVKDIREQ
EVYMGEMPLM TENGTFVING TERVIVSQLH RSPGVFFDHD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIML RALEYSTQEI LAIFYDTTKF DIKDGVISMS
LIADRLRGEM ALFDIAANGK IYVEQGKRIT ARHIKQLEKD NINTLDVPVE YIAEKDLVVA
KDYISKETGE IIVSANDILT LEILAELTQS GITSFDIIYT NELDCGSFIS DTLRVDSSSN
RLEALVEIYR MMRPGEPPTK DAAEGLFHNL FFAEERYELS KVGRMKFNRR VGIDGDEGAG
ILSKDDILSV MKTLIAIRNG DGIVDDIDHL GNRRIRCVGE MAENQFRVGL VRVERAVRER
LSLGDLDATM PQDLINAKPI SAAVKEFFGS SQLSQFMDQN NPLSEVTHKR RISALGPGGL
TRERAGFEVR DVHPTHYGRL CPIETPEGPN IGLINSLATF SRTNSYGFLE TPYRKVENGK
PTDQVEYLSA IEEGSFVIAQ ASASIDENGL LDEELIPCRH KGESTFLSPA DIDYMDVSPQ
QIISVAASLI PFLEHDDANR ALMGSNMQRQ AVPTLRADKP LVGTGIERRL AIDSGVTIIA
KRSGVIDYVD ASRIVVKVDD NELLPGEAGI DIYNLTKYTR SNQNTCINQK PTCEPGEPIV
RGDVLADGPS TDMGDLALGQ NMKIAFMPWN GYNFEDSILI SERVSQEDRF TTIHIQEFSC
VARETKLGSE EISADIPNVG EAALSKLDES GIVYVGAEVK PGDILVGKVT PKGETQLTPE
EKLLRAIFGE KASDVKDSSL RVAASTYATV IDVQVFTRDG VEKDKRALEI EEMQLKAAKK
DLTEKFKILE NAIYEKALAI LVGAGQDEAR LLQMPRAQWL EVQIDDETKQ SYLDQIITQY
DEVKADYDKE FDIKRRKITQ GDDLAPGVQK IVKVYLAVRR RLQPGDKMAG RHGNKGVISN
IVPVEDMPHD EFGVPVDIVL NPLGVPSRMN IGQVLETHLG LAAKGVGEKL ERMIKYQRDI
EITKVREFVQ KLYSFGDAPC HVDLNDFDDE AVMRLAKNLY KGLPVATPAF DGANEGEIRE
LLRMADLPES GQLQLTDGRT GIQFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ
PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VNGRTKMYKN IVDGDHRMEP
GMPESFNVLL KEIRSLSINI ELDESN
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