| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3038 |
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| Symbol | pilU |
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| ID | 4626051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 3737713 |
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| End bp | 3738828 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639798156 |
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| Product | type II secretion system protein (twitching motility protein) (PilU) |
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| Protein accession | YP_944339 |
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| Protein GI | 119946659 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0564932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGAAA AGTTATTAAT TAAGGTCGAT GAATCAAAAG CATCTGATTT ATATATTTCA
GTTGGTTTGC CGGCAACAAT GAAATTAAAT GGAACATTAA AGGCTATTAA TGAACATATA
CTGACCAGCG AAGAAGTTTA TGATCTCTTA AAAGAGGTCA TGGATGAAAA ACATTTTAAT
GAATTTATGA CTATTAAAGA ATCCAATTTT GCGCACCATC CCAACGATGG TAAGCGTTTT
AGGATCAGTG CTTTTATGCA AAAAGGGCAA CCTGCTATGG TGCTCCGCCG TATAGAAACT
AAAATACCTG AATTTGCTGA GATAAATTTA CCGGAACGAT TAAAAGATGT CTGTCTGGCA
AAAGAGGGCT TAATTTTATT TGTAGGTGCA ACGGGTGTCG GTAAATCAAC GACACAAGCA
GCAATGATTG GTTTTCGAAA TCAAAATTCA TGCGATCATA TCCTGACCAT TGAAGATCCG
ATTGAGTTTA TTCACGAACA TGGAAAATCT GTGATCACCC AACGCGAAAT TGGTGTTGAT
ACTGGTTCAT TTGATGAGGC GCTGAAAAAT TCATTACGCC AAGCGGCTGA TGTTATTGTC
GTCGGTGAAA TACGAACACG ACAAACCATG GAATTCGTTC TGTCATTTGC TGAGACCGGG
CATTTATGTA TGGCGACTAT GCATGCTAAA AATGCGAATC AGGCTTTAGA TCGTATTCTA
CATTTAGTGC CGCAGGAAAA TCATCGCCAG TTTCTATTTG ATCTGTCGGT CAATTTACGT
GCAATAGTTG CCCAGCAGTT AATTCCAACA ACAGATGGAC AAGGGCGGCG AGCTGCATTT
GAAATTTTAT ATAATACACC GACCATGGCT GAAGCTATTC GTACTGGCGA GCTGCATACC
CTTAAACAGA TTATGAAATC ATCAGGACAA CATGGTATGC AAACCTTTGA CCAAGCGCTG
TTTGATTTAT ATGAAAGCGG CATTATCGGT TATACCGAAG CATTGGCCTA TTCTGATTCA
GCAAATGATG TACGCTTAAT GATTAAGCTT AAATCAACTG AAAGCCGAAA AAGTTTAGAC
AGTGGCAAGC TTTCTGATGT TACAGTCGAC TTTTAA
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| Protein sequence | MLEKLLIKVD ESKASDLYIS VGLPATMKLN GTLKAINEHI LTSEEVYDLL KEVMDEKHFN
EFMTIKESNF AHHPNDGKRF RISAFMQKGQ PAMVLRRIET KIPEFAEINL PERLKDVCLA
KEGLILFVGA TGVGKSTTQA AMIGFRNQNS CDHILTIEDP IEFIHEHGKS VITQREIGVD
TGSFDEALKN SLRQAADVIV VGEIRTRQTM EFVLSFAETG HLCMATMHAK NANQALDRIL
HLVPQENHRQ FLFDLSVNLR AIVAQQLIPT TDGQGRRAAF EILYNTPTMA EAIRTGELHT
LKQIMKSSGQ HGMQTFDQAL FDLYESGIIG YTEALAYSDS ANDVRLMIKL KSTESRKSLD
SGKLSDVTVD F
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