Gene Ping_3027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3027 
Symbol 
ID4625113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3725236 
End bp3726456 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content40% 
IMG OID639798145 
ProductSerine-type D-Ala-D-Ala carboxypeptidase 
Protein accessionYP_944328 
Protein GI119946648 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAGAA AATATTTTTA TTCTAATCAT TCACAGGTAT CTTTCATGAA AAAAATAAGC 
CTTCTGGTTA CCGCGCTCAT TTTCAGCTTT AACCTATTTG CAAACCCAAC AATAACGCCA
AGTGCACCGG AAATTGGCGC AAAGGGATAT CTGCTTATTG ATTTTAATTC AGGAAAAGTA
CTTTCTGAAA ATAATAGTGA TGTAAGACTT AATCCAGCCA GCCTTACAAA AATGATGACC
AGTTATATCA TTGGCCAGGA AATTAAATCC GGCAACTTAT CACCCGACGA TAAAGTGACT
ATTTCCGAAA AGGCGTGGTC AAAAAATTTC CCTGAGTCTT CTAAGATGTT TATTGAAGTG
GGTAAGGAAG TGAGCGTCGC CGACTTAAAT CGTGGCATTA TCATACAATC AGGTAATGAT
GCCTGTGTGG CGATGGCTGA ATATATCGCC GGTAGTGAAG GTGCCTTTGC AGATTTAATG
AATTCTTGGG CAGCCCAGTT AGGAATGAAT AATACGCAAT TTAAAAATAG CCACGGTTTA
ACAGCTGAGG GTCACTACAC AACACCGCAT GATATGGCTA TCTTGGCGCA AGCATTAATT
AATGATGTGC CCGATGAATA CCTTATATAC AGTGAAAAAT CATTTAAATT TAATGGTATT
GATCAACCAA ATCGTAACGC TTTATTATGG GACAAAAGTT TAGACGTAGA TGGTATCAAA
ACAGGCCATA CCAACGAGGC AGGTTACAGC TTGATTTCTT CGGCAACCAA AGATGGCATG
CGTCTAATCA GTGTAGTAAT GGGCACCCGT TCAACTTCTG CACGTCTAAC CGAAAGTAAA
AAATTACTCA ATTGGGGATT CCGCTTTTTT GAAACGCTGA CTCCTTACAA TGCTGGCGAC
CAATTAGCGA ATGAAAGAAT TTGGATGGGT AGCCAGCCAA TGATTCGATT AGGCGTAAAA
GATGATACGC CTATTACGCT GCCAAGAGGT GAGGCCAAAA ATTTAACCGC TAATTTTATT
ATTGAAAATG AATTGCGCGC CCCCATCCAA AAAGGTGATG TGGTCGGCAA GGTAAACTAT
TCAGTGACGG GTCAACAGAC AGTGGATGAC GAACCGATTG CGACCTACGA TCTGATCGCC
TTAGAAACCG TGGAAGAAGG TGGTTTATTT AGTCGCTTGA TAGATTATAT TAAGTTATTA
TTTATTGGTT GGTTTAGCTG A
 
Protein sequence
MIRKYFYSNH SQVSFMKKIS LLVTALIFSF NLFANPTITP SAPEIGAKGY LLIDFNSGKV 
LSENNSDVRL NPASLTKMMT SYIIGQEIKS GNLSPDDKVT ISEKAWSKNF PESSKMFIEV
GKEVSVADLN RGIIIQSGND ACVAMAEYIA GSEGAFADLM NSWAAQLGMN NTQFKNSHGL
TAEGHYTTPH DMAILAQALI NDVPDEYLIY SEKSFKFNGI DQPNRNALLW DKSLDVDGIK
TGHTNEAGYS LISSATKDGM RLISVVMGTR STSARLTESK KLLNWGFRFF ETLTPYNAGD
QLANERIWMG SQPMIRLGVK DDTPITLPRG EAKNLTANFI IENELRAPIQ KGDVVGKVNY
SVTGQQTVDD EPIATYDLIA LETVEEGGLF SRLIDYIKLL FIGWFS