| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2778 |
|---|
| Symbol | |
|---|
| ID | 4627063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3418097 |
|---|
| End bp | 3418900 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639797901 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_944084 |
|---|
| Protein GI | 119946404 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.649752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.721857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA CAAGATTAGC TTCAAAAAAC ATTCTGATTA CTGGTTCAGC AAGAGGAATG
GGGGCTGCAA CGGCTGAAAA TTACGCCGCA CAAGGTGCAA AAGTGTGTAT TGCCGATTTA
AATATCGATG GTTGTAATGA AGTGGTTGCA CGTATTATAG CCAATGGTGG CCAGGCAATA
GCAGTGCAAA TGGATGTGAC TAATCGTGAA TCTATTGCTG CTGGTGTACA AGCAACAGTT
GATGCTTTTG GTTCAATAAA TGTCATGCTT AATAATGCCG GTATCAATAA ACCATTAATG
TTTATGGATA TCACAGAAGA GAATTGGCAT CAAATTATGA CCGTTAATGG TCTTGGTTGT
TTAATGGGCA TGCAGGAAGC AGCTCGTCAA ATGATCAAAC AAGGTCCACA AGATGAACCT
TATAAAATCA TTAATGTAGG GTCTATTCTT TCCCGTCAGG CTTTCGATGA TGTTGTACCT
TATTCTTGCA GTAAACATGC TGTCTTAGCA ATGATTAACG GCGGTGCTAA AGCGTTGGTT
CAGCACAACA TTACGGTTAA TGGCTATGGT CCTGGTGTGG TTCGAACAGA ATTGTGGGAA
CAGTTGGATA AAGACCTGGT CGCAATCGGT AAATTCAAAA AAGAAGGTGA GTCTATGGAT
ACATTAGCAG CTGACAGTAT TCTTTTAGGT CGTTACTCTT ACCCTGAAGA TATTACAGGC
ACGGCTTCAT TCCTTGCGAG TAAAGATTCA GATTACATGA CGGGTCAATT AATTATGATT
GATGGCGGCA TGATAATGCA ATAA
|
|---|
| Protein sequence | MDKTRLASKN ILITGSARGM GAATAENYAA QGAKVCIADL NIDGCNEVVA RIIANGGQAI
AVQMDVTNRE SIAAGVQATV DAFGSINVML NNAGINKPLM FMDITEENWH QIMTVNGLGC
LMGMQEAARQ MIKQGPQDEP YKIINVGSIL SRQAFDDVVP YSCSKHAVLA MINGGAKALV
QHNITVNGYG PGVVRTELWE QLDKDLVAIG KFKKEGESMD TLAADSILLG RYSYPEDITG
TASFLASKDS DYMTGQLIMI DGGMIMQ
|
|---|
| |