| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2562 |
|---|
| Symbol | |
|---|
| ID | 4624212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 3136589 |
|---|
| End bp | 3138214 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639797691 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_943882 |
|---|
| Protein GI | 119946202 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.421281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATATCG AAAGAGTTAA TATTTACAAC TATAAATGTT ACTACGGGAA GTTCTCTATT
GAGTTTAACA AAGGTGTGAA TATTCTTGTT GGAGATAATG GTTCAGGTAA ATCAACTATT
CTTGAAGCAG CTAATTTGGT TCTTAGTGGA ATACTACACG GCAAATACTT AAAGAATGAA
CTAAGCCAGT ACTTATTCAA TTGCAAAGCT GTATCTGAGT ACCTAACCCA AGTGAACGAT
GGTGGCAGTA CGACTTTACC CGAAATATGC ATCGAGGTTA TTTTCAACAA AGATAGCTTC
CCTAAATTTC AGGGAACAGG AAACAAGGGG AGGAATGATG CGTGTGGAGT GTCATTCAAA
GTCGAATTCG ATGATAGCTA TACAGAAGAG TACTCTGAAC TTATAAAGAG TGGAGGTAAG
CTTAAAACAC TACCTATTGA GTATTATAAG GTTTCATGGA CATCTTTCGA TAGAGATTCA
GTTACATCCA GAAGCATCCC AATCAAGTCT GTTCTAATCG ACTCATCTTC GAACAAGTAC
CAAAATGGTT CTGATGTATA CATTTCAAGA ATCATCAGAA ATGAACTGGA GAACAAAGAG
AAGGTCAAAT TATCTCAGGC ATACAGAAAA ATGAAAGATA GCTTCACTGA AGAGGAAGCA
GTAAAGAGAA TTAACGAACA GATTGATAAT AAATCAAAAG TTCAAGGGGA ACACCTTAAT
ATATCTGTTG ACCTTTCGAC TCAAAATTCT TGGGAGTCTA GTTTGATGAC CTACCTTGGA
GACATTCCGT TCCATCAAGT AGGTAAAGGC TCCCAGTGCG TGATAAAAAC AAATCTTGCA
TTGGGTCATC AAAAGACTAA AGAAGCAAGT TTACTATTGA TAGAAGAACC AGAAAATCAT
TTATCACACT CTAAGTTAAA TTACTTATTA AAAGAAATCA TAAATGGTGT GAGTGATAAG
CAAGTTATTA TTTCAACACA TAGCAGCTTC GTAGCTAATA AACTTGGTCT TGAAAATCTT
CTTCTCCTAA ATGACCATAA AGTAACAAGA TTTAAAGATT TATCAAAAGA CACTTTCGAT
TTCTTTAAGA AGCTGCCGGG CTATCAAACC TTACGCCTGA TTCTTTGTAA AAAAGCAGTG
CTCGTTGAAG GTGATTCCGA TGAATTAATA TTTCAAAGAG CTTATATGGA TGCGAATAAC
GGAGTATTGC CCATCGAACA TGGTTTTGAT GTGATATCTG TAAAACTTAC ATTTAAACGT
TTTTTAGAAA TAGCTGACAA AATTGATAAA AAAGTGGCGG TAATCACCGA TAATGATGGA
GAATACGCCA ATACGATCAC CAAAAAATAT AAGGATTACC ATAAACATGC TCACATCTCC
ATCTTTGCAG ACAATCGTAA TAACTTAAAC ACACTTGAGC CACAGTTTGC TGATGCAAAC
AAAGATGCAT TACCCATTTT ATGCAAAGCC CTTGAATTGA ATGTGAAGAA CTTTGATACC
GTTGAAAAAT TATCAGAAAA ACTACAAACA CAAAAAACCA GTTGGTCTCT AAAGGTTTTT
GAATCAAAAT ATAATTTTAG CTATCCAGAA TACATCACTA AAACAGTGGA GTGGTGTAAT
GAATAA
|
|---|
| Protein sequence | MYIERVNIYN YKCYYGKFSI EFNKGVNILV GDNGSGKSTI LEAANLVLSG ILHGKYLKNE
LSQYLFNCKA VSEYLTQVND GGSTTLPEIC IEVIFNKDSF PKFQGTGNKG RNDACGVSFK
VEFDDSYTEE YSELIKSGGK LKTLPIEYYK VSWTSFDRDS VTSRSIPIKS VLIDSSSNKY
QNGSDVYISR IIRNELENKE KVKLSQAYRK MKDSFTEEEA VKRINEQIDN KSKVQGEHLN
ISVDLSTQNS WESSLMTYLG DIPFHQVGKG SQCVIKTNLA LGHQKTKEAS LLLIEEPENH
LSHSKLNYLL KEIINGVSDK QVIISTHSSF VANKLGLENL LLLNDHKVTR FKDLSKDTFD
FFKKLPGYQT LRLILCKKAV LVEGDSDELI FQRAYMDANN GVLPIEHGFD VISVKLTFKR
FLEIADKIDK KVAVITDNDG EYANTITKKY KDYHKHAHIS IFADNRNNLN TLEPQFADAN
KDALPILCKA LELNVKNFDT VEKLSEKLQT QKTSWSLKVF ESKYNFSYPE YITKTVEWCN
E
|
|---|
| |