Gene Ping_2254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_2254 
SymbolsdhA 
ID4623464 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp2740382 
End bp2742148 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content44% 
IMG OID639797394 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_943594 
Protein GI119945914 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.453422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.274072 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTTTAC CGATTCGTGA ATTTGATGCT ATTGTGATTG GTGCGGGTGG CGCAGGTATG 
CGCGCAGCAC TTTCCATTTC AGAAGAAGGC AAAAGTTGTG CCTTAATAAG TAAAGTTTTT
CCAACCCGCT CTCATACTGT TTCAGCGCAA GGCGGTATTA CTGTCGCATT GGGTAATGCC
CATGAAGATG ATTGGCAGTA TCACATGTAT GATACCGTTA AGGGCTCTGA TTATATCGGT
GACCAGGACG CTATTGAGTA TATGTGTAAA ATCGGGCCTG AAGTTGTACG CGAGCTTGAA
CATATGGGCT TGCCTTTTTC TCGTTTTGAA GACGGCAGTA TTTACCAGCG TCCCTTTGGC
GGGCAGTCTA AAGAATATGG TCAAGGTCAA GCATCTCGTA CTGCGGCAGC TGCCGACCGT
ACTGGTCATG CTTTATTACA CACACTTTAT CAGCAGAATA TTAAAAATAA AACCACCGTT
TTTTCTGAGT GGTATGCACT TGATTTAGTA AAAAATGATG ACGGTGATGT TGTTGGCTGT
ACTGCTATTG ATATTGAGTC TGGCGAAGTA GTGATGTTTA AAGCACAGGC GACCGTGCTT
GCAACGGGTG GAGCAGGTCG TATTTACGCC TCTACCACTA ATGCACATAT TAACACCGGC
GATGGTGTTG GCATGGCGCT GCGTGCGGGT GTTCCAGTGC AGGATATGGA AATGTGGCAG
TTCCATCCGA CTGGCATTGC TGGTGCAGGT ACACTAGTAA CAGAAGGCTG TCGTGGTGAA
GGTGGTTATC TGCTTAATAA AGATGGCGAA CGTTTTATGG AACGTTATGC GCCAAATGCC
AAAGATTTAG CAGGGCGCGA TGTTGTTGCC CGTGCAATGA TGATTGAAAT TCGTGAAGGT
CGCGGTTGCG AGGGGCCGTG GGGCGTACAC CTTAAATTAA AACTAGACCA CTTAGGTAAA
GATGTTTTAG AGTCGAGATT ACCAGGTGTT ATGGAATTAT CACGTACTTT TGCGCATGTT
GATCCTGTTA AAGAGCCTAT TCCAGTTATT CCAACCTGTC ATTATCAAAT GGGTGGCGTA
CCAACAACAG TCAATGGTCA AGTGCTTAAA TTGGATGAAA ACGGTAAAGA TGTAGAAGTT
AAAGGACTCT TTGCAGTCGG TGAAATAGCA TGCGTATCAG TACACGGTTC TAACCGCTTA
GGTGGTAATT CACTGTTAGA CTTAGTGGTA TTTGGCCGTG CGACAGGTAA ACATTTGGGT
GTGGTGCTTG CGCAAGAAAA CACAGCTAAG GAGCCTACCC AGGAAAATAT TGATGCTACA
CTGGAACGTT TTAACCGTTG GGAAAAAGGT AACGGCACTG AATGTCCAAA TCAAATCAGA
AAAGATCTGC AGCAGTGTAT GCAAAACAAT TTCTCTGTCT TTAGAGATGG TGAGGCAATG
GCCGAAGGCT TAGCTGAACT GAAAGTACTG CGTGAGCGTT TGAAAAATGC AAAATTAGAC
GATAAAAGTA CCGAATTTAA CACTAACCGC ATTGAATGTT TAGAGCTTGA TAACTTGATG
GAAACTGCAT TTTCAACTGC CATGGCCGCT AATTTTAGAA CGGAAAGTCG AGGCGCACAC
AGCCGCTTTG ATTACCCGGA TCGGGATGAT AAAAGTTGGC TATGCCACAG CATCTTTAAT
CCTGAAACCG AAGAGATGTG TAAGCGTGAT GTTAATATGA AACCAGTATT GCGTGAACCT
TTCCCTCCTA AAGCACGTGT TTATTAA
 
Protein sequence
MSLPIREFDA IVIGAGGAGM RAALSISEEG KSCALISKVF PTRSHTVSAQ GGITVALGNA 
HEDDWQYHMY DTVKGSDYIG DQDAIEYMCK IGPEVVRELE HMGLPFSRFE DGSIYQRPFG
GQSKEYGQGQ ASRTAAAADR TGHALLHTLY QQNIKNKTTV FSEWYALDLV KNDDGDVVGC
TAIDIESGEV VMFKAQATVL ATGGAGRIYA STTNAHINTG DGVGMALRAG VPVQDMEMWQ
FHPTGIAGAG TLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RAMMIEIREG
RGCEGPWGVH LKLKLDHLGK DVLESRLPGV MELSRTFAHV DPVKEPIPVI PTCHYQMGGV
PTTVNGQVLK LDENGKDVEV KGLFAVGEIA CVSVHGSNRL GGNSLLDLVV FGRATGKHLG
VVLAQENTAK EPTQENIDAT LERFNRWEKG NGTECPNQIR KDLQQCMQNN FSVFRDGEAM
AEGLAELKVL RERLKNAKLD DKSTEFNTNR IECLELDNLM ETAFSTAMAA NFRTESRGAH
SRFDYPDRDD KSWLCHSIFN PETEEMCKRD VNMKPVLREP FPPKARVY