| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2195 |
|---|
| Symbol | |
|---|
| ID | 4625665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2670527 |
|---|
| End bp | 2671537 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639797333 |
|---|
| Product | ABC oligopeptide/dipeptide transporter ATP-binding protein |
|---|
| Protein accession | YP_943535 |
|---|
| Protein GI | 119945855 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.249892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.536301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAT TAGATATACG CAACTTAAGC ATCGATATCA CAACAGCCCA GGGCACTACG
CGGGTTGTTG ATAAAGTATC ATTACATATT GTTGATGGTT CAATACATGG TTTATTTGGA
GAGTCGGGCT CAGGTAAGAG TTTAATTGCC AGCGCTATAT TAGGATTACA TAACCCAAAT
TGGAAAGTAA CAGTCGATAG GATGTTTTTA GACTCAAAGG ATTTAACTAA ACTCTCTCCA
TCTGAGCGGC GTAAGATAAT GGGCAAGGAA ATCGCCATGA TATTTCAACA CCCCCGCTCT
TACTTAGATC CAAGTAAAAA AATATTTCCA CAAATAAACG AAGTTTTACC TAATATCTCT
TTAAAAAACC GACTATTTGA TAAAATAAAG CACGATAGAA AGAAAACATC AATTCAACAA
ATAAAAGAGT TATTTCACAA AGTTGGCATT CAGAATGATC AAGCTGTGTT ACAAAGTTAT
CCTCACCAGC TATCAGAAGG TATTTGCCAA AAAATAATGA TCGCAATGGC AATCGCTAAT
AATCCAAGGC TTATTATTGC AGACGAACCA ACCAATGCCA TGGAAGCCGT TACCCAGGCT
CAGATACTGC GTTTATTATA TAAATTAAAT CGATTGCACA GTACAACTAT TTTGTTATTA
AGCAATAACT TTGGCTCTAT CTGTAATTTA TCTGATTTTA TTACCTTGAT TTACTGTGGT
CAGGCTGTAG AGTCAGGTAA CTATAAAAAA ATTATTGAAA GCCCAATGCA TCCCTATACA
GAAGCGATGA TAAAAACCAC ACTAAACTTT AATGAATCTA TTATCCATAA AAGTCAATTA
TATACATTAC AGGGAAATAT TCCGTCATCA AACCAAATAC CAATCGGTTG TCGTTTGGGA
CCACGCTGCC CGCGAGCGCA AAGAACCTGC GTAAAAAATC CTGATACGTT AAATTATAAA
GGGCATACGG TCCGTTGCCA TTACCCAACC TTAGATGAAA AAACAGCATG A
|
|---|
| Protein sequence | MALLDIRNLS IDITTAQGTT RVVDKVSLHI VDGSIHGLFG ESGSGKSLIA SAILGLHNPN
WKVTVDRMFL DSKDLTKLSP SERRKIMGKE IAMIFQHPRS YLDPSKKIFP QINEVLPNIS
LKNRLFDKIK HDRKKTSIQQ IKELFHKVGI QNDQAVLQSY PHQLSEGICQ KIMIAMAIAN
NPRLIIADEP TNAMEAVTQA QILRLLYKLN RLHSTTILLL SNNFGSICNL SDFITLIYCG
QAVESGNYKK IIESPMHPYT EAMIKTTLNF NESIIHKSQL YTLQGNIPSS NQIPIGCRLG
PRCPRAQRTC VKNPDTLNYK GHTVRCHYPT LDEKTA
|
|---|
| |