| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2082 |
|---|
| Symbol | |
|---|
| ID | 4627004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2530320 |
|---|
| End bp | 2531576 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639797229 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_943431 |
|---|
| Protein GI | 119945751 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0152588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.581205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTT GTGTATTAGG TGCGGGTGTT ATTGGTCTTA CTTCTGCTTA CTATTTGGCG
AAAAAAGGCT TTCAGGTGAC GGTGATTGAT CGTCAGCCCG GTGTTGCTTT GGAAACCAGT
TTTGCTAATG CAGGACAAAT TTCACCTGGT TATTCTGCGC CTTGGGCGGC GCCAGGTATC
CCTTTTAAAG CGGTTAAGTG GCTAATGCAA AAGCATAGTC CGCTTAGACT GAGTCCTGAG
CCTGAAATGA AAAAGCTTTT ATGGATGGCG AAGATGTTGG GGCAGTGTAA TGGTGATGAT
TACAATCTAA ATAAATCCAG AATGATGGCC CTTGCCGAAT ACAGCCGCGA TCAATTTATT
GCCTTAAGAA AAGAGATCGG TATTTCATAT CAAGATGGTC AGTCTGGTAC TTTGCAGTTA
TTTCGCAAAG ATGAGCAGGT GGAAGCATCA GAAAAAGACA TTAAAGTACT CAAGGCGTTG
GGTGTACCTC ATCAGGTATT AAGCCCGGAA CAAATCGCGC AAGTAGAACC TGGGCTTGCC
CCTGTGATTG ATAAGTTCAA AGGGGGGTTG CGCCTGACTG GAGATGAAAC AGGAGATTGT
TATTTATTTT GTCAGTCCCT TAAAGAGAAA TGCGAAAATT TGGGTGTGAC TTTTCAATTT
AACTCGGATA TTAAATCCTT GAGTGTTCAA GCGAATAAGA TTAAAGGCGT TGAAACTCAG
TTTGGTGTAC AAGCCTTTGA TAAGGTACTG GTGTGTCTGG GGAGTTATTC AAAAGAGCTG
CTTAAGGCCT GTGATATTGA TATTCCGGTT TATCCCGTGA AAGGTTATTC ATTGACTATC
CCTATTTCTA ATGAAAAATA TGCGCCGCTG TCAACGGTAA TGGATGAAAC CTATAAGGTC
GCTGTAACAC GCTTAGGTGA CCGTATTCGT GCTGCAGGTA CAGCCGAGTT GTCCGGTTAT
AACTTGGATT TACCTAAGTC TCGAACTGAT ACCATTAGTC ACGTAGTGGG TGACTTATTT
GCTCAGGGAT GTGATTTGTC TTTGGCGGAT TATTGGACGG GGTTACGACC TATGACACCC
GATGGTACCC CTGTTGTTGG TGCCAGTGGG ATTGATGGTT TATATCTTAA TACCGGTCAT
GGCACCCTGG GCTGGACAAT GAGTTGTGGT TCCGGTGCTG TTATTGCAGA TATCATCGCG
GGCAGCAAAA CCGAAATTGA TTCCGAGGCA TTGTCAGCTA AGCGTTACAA GGCATAA
|
|---|
| Protein sequence | MQVCVLGAGV IGLTSAYYLA KKGFQVTVID RQPGVALETS FANAGQISPG YSAPWAAPGI
PFKAVKWLMQ KHSPLRLSPE PEMKKLLWMA KMLGQCNGDD YNLNKSRMMA LAEYSRDQFI
ALRKEIGISY QDGQSGTLQL FRKDEQVEAS EKDIKVLKAL GVPHQVLSPE QIAQVEPGLA
PVIDKFKGGL RLTGDETGDC YLFCQSLKEK CENLGVTFQF NSDIKSLSVQ ANKIKGVETQ
FGVQAFDKVL VCLGSYSKEL LKACDIDIPV YPVKGYSLTI PISNEKYAPL STVMDETYKV
AVTRLGDRIR AAGTAELSGY NLDLPKSRTD TISHVVGDLF AQGCDLSLAD YWTGLRPMTP
DGTPVVGASG IDGLYLNTGH GTLGWTMSCG SGAVIADIIA GSKTEIDSEA LSAKRYKA
|
|---|
| |