| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1841 |
|---|
| Symbol | |
|---|
| ID | 4626136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2237056 |
|---|
| End bp | 2238852 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639797015 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_943217 |
|---|
| Protein GI | 119945537 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.142292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.143257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGG ACGTAGAATA CGACAGTAAA CTTAATGATA GAAAACGCCA TCAGGCAGAC
CTTACTCTTT CCAACAATGC GCTTGCCATT GCCAACAAGG ATCTTGCCTT TCAAAATGAA
GAGAAGGATA AACGGGCAGC AGAGCTTGCC ATTGCCAACG AAGAAAAAAG TAAACGGGCA
GCAGAGCTTG CCATTGCTAA CAAAGAGCTT GCCTTTCAAA ATAAAGAGAA GGATAAACGG
GCAGCAGAGC TTGCCATTGC TAACAAAGAG CTTGCCTTTC AAAATAAAGA GAAGGATAAA
CGGGCAGCAG AGCTTGCCTT TCAAAATAAA GAGAAGGATA AACGGGCAGC AGAGCTTGCC
ATTGCTAACA AAGAGCTTGC CTTTCAAAAT AAAGAGAAAG ATAAACGGGC AGCAGAGCTG
GCCATTGCCA ACAAGGAGCT TGCCATTGCC AACGAAGAGA AAGGCAAACT GACAGAAAAA
CTCAATGACC TCGCCTTCTA TGACACGCTT ACCGGCTTGC CCAACAGACG TATTTTGATA
GACAGGCTAC ATCACGCGTT AGCTTCCAAT GTGCGTGAAG GCTGTGATAG TGCGGTGATG
TTTGTTGATT TGGATCATTT CAAGGATATC AACGATACCC TCGGCCATGG ATTCGGTGAT
TTACTGCTGA TCCAGATAGC GCAGCGTCTG GCGTCTTGCC TACGCAAAGG TGATACGGTG
GCGCGTCTGG GAGGGGACGA GTTTGTGTTG ATTCTGGAAA ATCTGGACAA AAAAACCATT
GAAGCCGCAG CAAAGGCGAA TGCCATTGCC GATAAAATTT TGGCTGCGCT TAATAAGCCC
TACCAGCTTG ACATGCACAA ATGCTACAGC ACTGTCAGTA TCGGAGCTGT CTTTTTTGAC
CATCAGGGTA ATACGGCAGA AGATCTGCTG AAACAAGCCG ACATTGCTAT GTATCAGGCC
AAACAAGCCG GCGGCAATCA GATCAGGTTC TTTAACCCGG AAATGCAGGA AATTATTAAT
GTGCGCATCA CCCTCGAAAA TGAACTGCGC CTTGCCATTG AAAAATCGCA ATTTCATTTG
TATTACCAAA TTCAGATGGA CAGTGCCAAC CGAGTATTGG GAGCCGAGGC ATTGATCCGC
TGGATGCACC CTGAACGTGG ACTAGTGTTA CCTGCTACCT TTATTCCTTT AGCGGAAGAA
ACCGGCTTAA TTCTACCTAT TGGGAAATGG GTTATCGAGA CGGCTTGTGC GCAGATAAAA
GTATGGCAGA AAGAGCCCCT GACCCGCAAC TTAACACTGT CAGTCAATGT GAGTGCCAAA
CAATTCCGGC AGAAGAATTT TGTGGAAAAA GTGCAGTCAG CTGTAGAGCG ATATGCTGTT
CCCGGAAATT TACTTAAGCT GGAATTGACC GAAAGCCTGT TGCAATACGA TATCGAAGTC
ACCATTGCCA TGATGAAGGC ATTAAATAAG ATTGGTGTTC AGTTTTCCCT GGATGACTTC
GGCACAGGTT ATTCATCCTT ACAATACCTT AAGCGGCTGC CCCTCGATCA GTTCAAGATA
GACCAATCGT TCGTGCGTGA TATTGCGACA GATAATAACG ATAAAGCGAT AGTAAAAGCG
ATTGTTGCTA TGGCACAGAT TCTGGATATA GACGTTATTG CCGAGGGAGT GGAAACTGAA
GAGCAACGAC AATTACTCTT AGGCAAAGGA TGCGTCTTTT TCCAAGGGTA TTTATTCAGC
AAACCAATAC CAATTGATGA ATTTGAGGCG TTAATTTGTC GTTTAACTGA CACCTGA
|
|---|
| Protein sequence | MSKDVEYDSK LNDRKRHQAD LTLSNNALAI ANKDLAFQNE EKDKRAAELA IANEEKSKRA
AELAIANKEL AFQNKEKDKR AAELAIANKE LAFQNKEKDK RAAELAFQNK EKDKRAAELA
IANKELAFQN KEKDKRAAEL AIANKELAIA NEEKGKLTEK LNDLAFYDTL TGLPNRRILI
DRLHHALASN VREGCDSAVM FVDLDHFKDI NDTLGHGFGD LLLIQIAQRL ASCLRKGDTV
ARLGGDEFVL ILENLDKKTI EAAAKANAIA DKILAALNKP YQLDMHKCYS TVSIGAVFFD
HQGNTAEDLL KQADIAMYQA KQAGGNQIRF FNPEMQEIIN VRITLENELR LAIEKSQFHL
YYQIQMDSAN RVLGAEALIR WMHPERGLVL PATFIPLAEE TGLILPIGKW VIETACAQIK
VWQKEPLTRN LTLSVNVSAK QFRQKNFVEK VQSAVERYAV PGNLLKLELT ESLLQYDIEV
TIAMMKALNK IGVQFSLDDF GTGYSSLQYL KRLPLDQFKI DQSFVRDIAT DNNDKAIVKA
IVAMAQILDI DVIAEGVETE EQRQLLLGKG CVFFQGYLFS KPIPIDEFEA LICRLTDT
|
|---|
| |