Gene Ping_1202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1202 
Symbol 
ID4623753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1498112 
End bp1500916 
Gene Length2805 bp 
Protein Length934 aa 
Translation table11 
GC content32% 
IMG OID639796417 
Productfused sensor protein/response regulator 
Protein accessionYP_942633 
Protein GI119944953 
COG category[S] Function unknown
[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain
[COG2202] FOG: PAS/PAC domain
[COG3287] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.127641 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.087847 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTAA TAAACTGCCA GTTTAGAACA AAAAATGATT TAGAACTTTT TATAGATCAA 
AATATTAACG ATGCTAATAT TTCTATTTTA ATTCAAGTTT TTAGTGGTGA TTTGAATATT
GCTCATGTTC AGCAAGTGTT AGATACTTTA AAGTTCAAAC TTCCACATGC AACGATCATT
GGTTGCTCAA CGGCTGGCGA GATAGCTTCT GGCGCCATGA AAAAGAATAC TATTCAAATT
TCTTTCTCTC TTTTTGAAAA AACCAATCTT CAACTCTTTT ATTACCCTCA AACAAATTTT
ACAACGGGTG AGAAAGCTTC ATGTGATGTT ATTTCCCAAA ATACAAAAGC CGTTATTGCT
TTTAATGAGG CCTTTAAAGG GGATGCTGAA CTTTTTTTCG AAGGGTTTTC ATCTAAAAAA
CAAAATGCCC CCATCTCCGG CGGAAACGCT GGCGATAATC TTTTATATGG GAAAACTTTT
GTTATCTATG ACGATAAAAT TTATTTTGAG GGCATCGTCC TTTGTGCGTT GAATAGCGAT
AGCTTACATG CACACACAAA TCATTCCTTC AGCAGTGCTT CTATCGGCAC AGAAATGATT
GTTACTAAGG CTGTGGATAA TGTGATCTAT GAAATAGATT ACACGCCTGT CGATAAAATT
TATAGATATT ATCTGGGGGA TAATATTCTA CAACATTTTC CAATGAGTGT TGTTGAATTT
CCATTGGTAA AAATAGAGGG AGAAATGACT GTTGCCAGAT CAGCCGCTAG AATAAATGAA
GACGGTGGAT TTTTATATAT AGGTCATTTT GAAAATGGCG ATAAAGTGAA ATTTGCAATA
ACAAACAGTG TAGAGACATT CTCAAAATCA GATGATTTAT ATACAAAAAT AATGTCTAAT
CCCGTTGAAG CTACCTATGT TTATTCCTGT GCAGGCAGAA AAAGATTCCC AACAAAATGT
CTGAATTATG AACTTGGGCT GATTGAAAAA GTCGCCCCTT CGAGTGGTTT TTTCAGCTAT
GGAGAGTTTT TTTATTCAAA AACAAAAAAT CACCTTTTAA CGCTCACTAC AACGACGCTG
AGTTTGTCTG AAACAGACAT TATTCAAAGC CCAGATGAAA TTCCAAAAAG GATAAACGGC
CATTCTATAT TAAACCCACT GATACACTTA GTTAATGTCT CAGATACGAA CTTAAATCAG
TATAAACAAC TTTTAGATAA GAGTTCTATT GTCTCAAAAG CAGACATTCA AGGTGTTATC
ATTTATGTTA ATGATAATTT TTGTAAAATT TCAGGCTACT CTCGAGAAGA ATTGATTGGA
AAAAACCACA GTATAGTAAG GCATCCGGAT AACAGTAATA GCATATTTAA AAATATGTGG
ACGACTATCA CTGCTAAAAA AGTCTGGAAA GGCACGCTAA AAAACCGTGC AAAAGACGGC
TCCACCTACT ATGTAAAGAC CTTAATAATG CCTATTCTAG ATGACCAGGG ACATATTGTA
AGTTATATAG CGGCAAGAAC CGATGTGACA GAACTAATAA AAAAAGACGA AATTATTAAA
CAACAAAATG AAGATAAGCT AACCGGTTTA AAAAATAGAA GTGCACTGAT AGACAAACTG
AAAGACATTA AGAGAGAAGA TGCGACGCTT ATTCTTATGA ATATAGATAG ATTTTCTGAT
ATTAATGATT ATTACGGTTA TGAGAAAGGT GATAAAACCT TGGAACATTT TGCCTCTGTT
CTTAAAGGTA AATATGTTGA ATTTTCCAGA ATAAGCAGTG ACGTCTCTAG CGTCAGTTGT
GATATTTTTA GAATAAGTGG TGATGAGTTT GCAATACTTT GCGAGCACTC ATTAGATAAA
AAAATAAAAG AGATGATAGC AGGGTTGATT ATGAGCCTGG AGAATGAAGT ATATGAAATA
TTAGATGATA AAATCACCTT GCTTTTATCG TGTGGAGTGG CTAATGGTGC TAAAAATGAA
ATATATAATC TTGCCCATAT TGCTTTAAAA GAAAATAAAA AAGATAATAA TACAGTTACT
TTTTTTAATG ATAATATGAA TTTATACAAC AAAATAGCAG AAAATATAAA AGTGATAGCA
AGCATAAAAG AGGGAATACT TAACGATAAA TTTGTGCCCT TTTATCAAGG TATAGTTAAT
AATAAAACCA AAAAAATAAC TAAATATGAG TGTCTGATAC GCTTAAAAGA AGAAAATGGT
AAGGTGCTGA CGCCGTATTT TTTTCTGGAA CATGCTAAAA AAGCGAAGCT TTATTATAAA
CTTACGATGA TTATGATCAG GAAATCATTT GAAAAGTTTG CAGGCAATAA CTCTGATTTT
TCTATCAACT TTACACTTCA AGATATTCAA TCCGAGACCG TTGTAAGCAT GTTGATGGAT
TATCTTGAGC GGTATCAATG TGGAAACAGA TTAATTATAG AAATAGTCGA GTCTGAAGGA
ATTGAAAATT TTAATGAACT GTCAGATTTC ATAAAACAGA TTAAAAAATA CGGTTGTAAA
GTGGCAATAG ATGATTTCGG ATCAGGCTAT TCTAACTTTC ATTATTTATC AAAATTAGAT
GTGGACTATA TAAAAATAGA TGGCTCTTTA ATAAAAAATA TAGATAATGA CCCCTCTCAA
CTTGCAACCG TTGAGAGTAT TTTACTTTTT GCTAAAAAGA TGAATATAAA AACGATTGCT
GAATTTGTTG AGACAAAAAA CATTTATGAT ATTTTAAATG ATTTAGGCGT TGATTTTTCC
CAAGGATACT ATTTTTCTAA ACCACAGGAA GAAATAGAAA AATAA
 
Protein sequence
MKLINCQFRT KNDLELFIDQ NINDANISIL IQVFSGDLNI AHVQQVLDTL KFKLPHATII 
GCSTAGEIAS GAMKKNTIQI SFSLFEKTNL QLFYYPQTNF TTGEKASCDV ISQNTKAVIA
FNEAFKGDAE LFFEGFSSKK QNAPISGGNA GDNLLYGKTF VIYDDKIYFE GIVLCALNSD
SLHAHTNHSF SSASIGTEMI VTKAVDNVIY EIDYTPVDKI YRYYLGDNIL QHFPMSVVEF
PLVKIEGEMT VARSAARINE DGGFLYIGHF ENGDKVKFAI TNSVETFSKS DDLYTKIMSN
PVEATYVYSC AGRKRFPTKC LNYELGLIEK VAPSSGFFSY GEFFYSKTKN HLLTLTTTTL
SLSETDIIQS PDEIPKRING HSILNPLIHL VNVSDTNLNQ YKQLLDKSSI VSKADIQGVI
IYVNDNFCKI SGYSREELIG KNHSIVRHPD NSNSIFKNMW TTITAKKVWK GTLKNRAKDG
STYYVKTLIM PILDDQGHIV SYIAARTDVT ELIKKDEIIK QQNEDKLTGL KNRSALIDKL
KDIKREDATL ILMNIDRFSD INDYYGYEKG DKTLEHFASV LKGKYVEFSR ISSDVSSVSC
DIFRISGDEF AILCEHSLDK KIKEMIAGLI MSLENEVYEI LDDKITLLLS CGVANGAKNE
IYNLAHIALK ENKKDNNTVT FFNDNMNLYN KIAENIKVIA SIKEGILNDK FVPFYQGIVN
NKTKKITKYE CLIRLKEENG KVLTPYFFLE HAKKAKLYYK LTMIMIRKSF EKFAGNNSDF
SINFTLQDIQ SETVVSMLMD YLERYQCGNR LIIEIVESEG IENFNELSDF IKQIKKYGCK
VAIDDFGSGY SNFHYLSKLD VDYIKIDGSL IKNIDNDPSQ LATVESILLF AKKMNIKTIA
EFVETKNIYD ILNDLGVDFS QGYYFSKPQE EIEK