Gene Ping_1171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1171 
Symbol 
ID4624560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1461802 
End bp1463001 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content42% 
IMG OID639796385 
ProductPyrrolo-quinoline quinone 
Protein accessionYP_942606 
Protein GI119944926 
COG category[S] Function unknown 
COG ID[COG1520] FOG: WD40-like repeat 
TIGRFAM ID[TIGR03300] outer membrane assembly lipoprotein YfgL 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0406546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.22444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT GGCTTAAAAG TATTGCTGTT ATTTCGGGAA CCGCTTTTTT ATTAACGGGC 
TGTTCGCTTT TTAATAGTGA AGAAGATGTT GTGGTGATGG CAAACTTACC TATTTTTGAA
GCGTCCTATC AACCTAAGGT TGCCTGGCAA AAAAGTGTGG GCAACGGTGT TGATAAATAT
TATTCACAAT TACAACCTGC TGTTGATTCA GATGCTATTT ATGCCGCTTC TCGTGAAGGA
AAAATCAAAG CTTTTACACT AAAAGAAGGG GAATTACTTT GGTCCAATGA TTTTAGTGAA
CATGAAAGCA ATCAATTAAA CCGTTCAGCA CGATTTTCCG GTGGTATCAC ATTGGCAATG
GATACCTTAT TTATCGGCAC TGAAAATGCG CAAGTTTTAG CGATTGATAA AAACAGTGGT
GAGTTAAAAT GGTTATCTAG CGTCAGTGGT GAAGTGCTCG CTAAACCCGC CTACGCAAAC
GGTAAAGTGG TTGTGCATAC AAGCCGTGGA GAGCTGATTG CTCTGGATAG CCAGACCGGA
GAACAACTTT GGTCACTGAC CAATAAACAG CCTAATTTAA CATTACGCGG TAGTTCTACC
CCTTCAATTT CTCAAGGCGG AATTATTTAC GGACGAGCTG ATGGTTTTGT TTCAGCAGCC
TTACTTGAGA CCGGTCAGGC ATTGTGGCAA CTTCCAATCG CTCGTCCGCA TGGAGCGACT
GAATTAGATC GTATTGTGGA TGTCGATATG CAACCTGTCA TCTCCAACGG TCAGATTTTT
GCACTCGCTT ATAACGGAAA TTTAGCCGCC ATTGACTTGC TCAAGGGTGA ACAGCTCTGG
TCAACTAAGT ATTCTGGTTT TAATAATATT ACGTTATCAG GCAATCGCCT TTATTTAACG
GATTATCGAG GCTGGGTGTA TGCTGTTGAC CGCCGTACAG GCGATCAGAT TTGGGTAAAC
GAACAATTGT CTTATCGTAA TGTCACCGCC GTCACTGTTG CTAATGAGTA TCTTGTTGTC
GGCGATGGGG AAGGTTACTT ACATTGGATC AACCGTGATA CCGGGCAGTT TGCTGCGCAA
CAAAAAATTG ATTCTAATGG ATTATATAAA GAGCCTGTTA CGACAGGAAC ACACCTTTAT
TTACTCTCTC GCAGTGGTAA ATTAATTGCG ATTGAAAAAC CATCGATAAA TGTAGAATAA
 
Protein sequence
MKKWLKSIAV ISGTAFLLTG CSLFNSEEDV VVMANLPIFE ASYQPKVAWQ KSVGNGVDKY 
YSQLQPAVDS DAIYAASREG KIKAFTLKEG ELLWSNDFSE HESNQLNRSA RFSGGITLAM
DTLFIGTENA QVLAIDKNSG ELKWLSSVSG EVLAKPAYAN GKVVVHTSRG ELIALDSQTG
EQLWSLTNKQ PNLTLRGSST PSISQGGIIY GRADGFVSAA LLETGQALWQ LPIARPHGAT
ELDRIVDVDM QPVISNGQIF ALAYNGNLAA IDLLKGEQLW STKYSGFNNI TLSGNRLYLT
DYRGWVYAVD RRTGDQIWVN EQLSYRNVTA VTVANEYLVV GDGEGYLHWI NRDTGQFAAQ
QKIDSNGLYK EPVTTGTHLY LLSRSGKLIA IEKPSINVE