Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_1082 |
Symbol | |
ID | 4625376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 1353219 |
End bp | 1355231 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 639796298 |
Product | excinuclease ABC subunit B |
Protein accession | YP_942520 |
Protein GI | 119944840 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00208033 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAAAC GCTTTCAACT TGTTTCTCAA TTCTCACCTG CCGGTGACCA ACCCCAAGCC ATTGAACAAT TAATTAATGG TCTTAAGTCT GGTCTCGCTT TTCAGACATT GCTGGGTGTG ACGGGATCGG GTAAAACATT TACCTTAGCG AATGCGATTG CAAAGCTTAA CCGTCCGACC TTAATTCTTG CGCCCAATAA AACACTTGCT GCACAGTTAT ACGGTGAAAT GAAAGAATTT TTTCCCAATA ACGCCGTCGA ATATTTTGTT TCCTATTATG ATTATTATCA GCCTGAAGCC TATGTACCCA GTTCAGATTC TTTTATCGAA AAAGATGCGG CTATTAACGC GCATATTGAA CAGATGCGCC TTTCTGCGAC CAAAGCGCTC TTAGAACGTA AAGATGTCGT CTTAGTGGCT TCCGTCTCAG CAATCTATGG TTTGGGTGAT CCAACCGCTT ATTTGCAAAT GATGCTGCAC CTCACTGTCG GGGAGATAAT ATCAAGCCGT GAGATACTGC AGCGTTTAGT CGATTTACAA TATAACCGTA ATGAAACCGA GCTAAGTCGC GGTACCTTTC GCGTACGTGG TGAAGTGATT GATATCTTTC CTGCAGATTC GGAAAAAGAA GCCTTACGAA TTGAGTTGTT TGATGATGAG GTCGAGCAAA TTTCAGTGTT TGATCCGCTT ACCGGCCAAG GAATAGATAA GCTTGCGCGT GTGACCGTTT ACCCTAAGAC CCATTATGTT ACTCCGCGAG AGCAAATCCT TAAAGCCGTC GACGCGATTA AAGTAGAGCT TAATGAGCGT AAAAAAGAGT TTCTTGAGCA GAATAAACTG CTTGAAGAGC AGCGCATCTC GCAGCGTACT CTGTACGATA TTGAGATGAT GAATGAACTT GGGTATTGCT CTGGTATAGA AAACTACTCA AGGTACCTCT CGGGGCGCAG CGAGGGCCAA GCACCTCCTA CTTTGTTTGA TTATCTGCCT AAAGATGCTT TATTAATTAT CGATGAAAGC CATGTCACCG TGCCGCAAAT TGGTGCCATG TATAAAGGAG ACCGTTCTCG TAAAGAAAAC CTGGTTAATT ATGGCTTTAG GTTACCTTCT GCCCTGGACA ACCGGCCCTT GAAATTTGCA GAGTTTGAAA AAATAGCACC ACAAACTATT TATGTTTCAG CCACCCCCAG CGATTATGAA ATTAATAAAT CTCAAGGTGA GATCATACGT CAGGTTATAC GTCCTACCGG TTTACTGGAT CCTGTTATAG AAGTTCGCCC GGTGACAACG CAGGTTGATG ATCTGCTCTC AGAGATTAAT ATCCGTTTAC CCTTAAAAGA ACGTGTCTTA GTGACGACGT TAACCAAGCG AATGGCGGAG GATTTGACTG ATTATTTGCA CGAGCACGGT ATTAAAGCCC GTTATCTTCA CTCCGATGTT AATACGGTTG AACGTGTTGA GATAATCAGA GATTTACGCT TAGGTATTTT TGACGTGTTA ATTGGCATTA ACTTGTTACG CGAAGGCCTG GATATTCCAG AAGTTTCTTT GGTGGCTATT TTAGATGCCG ATAAAGAGGG CTTTCTGCGA TCCGAACGTT CACTTATTCA AACCATGGGA CGTGCCGCCC GTAATTTAAA TGGTAAAGCC ATTTTATATG CCGCTCGTAT TACAGGCTCT ATGCAAAAAG CGATCAAAGT AACCGAAGAT CGGCGTGAAT TACAAAATAA ATTTAATATT GAAAATGGCA TTATTCCGCA AGGTTTGTCG AAACAAGTTA ACGATGTAAT GCAGTTGGGG CAAAAAAACC TTAAAAAAGG TAATTTAAAA CAGGGTAAGG TTGCTGAATA TAAAGCAAAT TACCAGATAC ATAGCGAACA AGATATTCTT AAACAGATAG CATTATCAGA AAAACAGATG TTTGCCTGTG CTAAAAATTT AGAGTTTGAA AAAGCGGCTT TATTTCGAGA TGAGGTGACT AAGTTACACG AGCAGTTAGT AAGTATAGGA TAA
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Protein sequence | MDKRFQLVSQ FSPAGDQPQA IEQLINGLKS GLAFQTLLGV TGSGKTFTLA NAIAKLNRPT LILAPNKTLA AQLYGEMKEF FPNNAVEYFV SYYDYYQPEA YVPSSDSFIE KDAAINAHIE QMRLSATKAL LERKDVVLVA SVSAIYGLGD PTAYLQMMLH LTVGEIISSR EILQRLVDLQ YNRNETELSR GTFRVRGEVI DIFPADSEKE ALRIELFDDE VEQISVFDPL TGQGIDKLAR VTVYPKTHYV TPREQILKAV DAIKVELNER KKEFLEQNKL LEEQRISQRT LYDIEMMNEL GYCSGIENYS RYLSGRSEGQ APPTLFDYLP KDALLIIDES HVTVPQIGAM YKGDRSRKEN LVNYGFRLPS ALDNRPLKFA EFEKIAPQTI YVSATPSDYE INKSQGEIIR QVIRPTGLLD PVIEVRPVTT QVDDLLSEIN IRLPLKERVL VTTLTKRMAE DLTDYLHEHG IKARYLHSDV NTVERVEIIR DLRLGIFDVL IGINLLREGL DIPEVSLVAI LDADKEGFLR SERSLIQTMG RAARNLNGKA ILYAARITGS MQKAIKVTED RRELQNKFNI ENGIIPQGLS KQVNDVMQLG QKNLKKGNLK QGKVAEYKAN YQIHSEQDIL KQIALSEKQM FACAKNLEFE KAALFRDEVT KLHEQLVSIG
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